Jatropha Genome Database

JcCB0018351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.20 + phase: 0 /partial/short
         (49 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011470001 assembled CDS                                        92   4e-20
GSVIVT01032565001 assembled CDS                                        60   2e-10
GSVIVT01020116001 assembled CDS                                        54   2e-08

>GSVIVT01011470001 assembled CDS
          Length = 558

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRDD 49
           K+GI ++GLTIQAQKPEELPEQ+LCCVRLNKIDF++HGQIPTIVT  DD
Sbjct: 509 KNGIVDLGLTIQAQKPEELPEQMLCCVRLNKIDFIDHGQIPTIVTLDDD 557


>GSVIVT01032565001 assembled CDS
          Length = 479

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           KH I + GLTIQ  K E+LPE +LCC+RLN+ID+ NH Q+
Sbjct: 438 KHCILDFGLTIQGNKAEDLPENILCCMRLNEIDYANHNQL 477


>GSVIVT01020116001 assembled CDS
          Length = 510

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 4   IANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           + ++GLTIQ  K EELPEQ+LCC+RLN I+ +N+ Q+
Sbjct: 467 VLDLGLTIQGNKVEELPEQILCCIRLNGIEHINYHQL 503