Jatropha Genome Database

JcCB0018211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018211.10 + phase: 0 /partial
         (374 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038557001 assembled CDS                                       458   e-129
GSVIVT01011429001 assembled CDS                                       177   8e-45
GSVIVT01019680001 assembled CDS                                       145   4e-35
GSVIVT01027437001 assembled CDS                                       139   2e-33
GSVIVT01021404001 assembled CDS                                        70   1e-12
GSVIVT01032233001 assembled CDS                                        70   2e-12
GSVIVT01012723001 assembled CDS                                        64   1e-10

>GSVIVT01038557001 assembled CDS
          Length = 568

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/297 (72%), Positives = 249/297 (83%), Gaps = 2/297 (0%)

Query: 80  LVLGAETDESGSVIGFNLISQSGAEE--IESHEDVAVDTAEEIVDAEGREKAQTRVKHSI 137
           +++  +  ++   +GF+L+     +   I+ HE ++     E  ++EG E+ +T+V ++I
Sbjct: 1   MLVNTDKKDASDSVGFHLVPPPSGDNGVIDPHEKLSTQKEAETGNSEGEEERKTKVTYNI 60

Query: 138 VFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNCR 197
           VFVT+E+APYSKTGGLGDVCGSLPIALA+ GHRVMVVSPRY +G+  D+    A DL   
Sbjct: 61  VFVTSESAPYSKTGGLGDVCGSLPIALAAHGHRVMVVSPRYQNGTCSDEIFSGASDLEHP 120

Query: 198 VKVYCFGGAQEVSFFHEYREGVDWVFVDHPSYHRPGNPYGDGRGAFGDNQFRFTVLCHAA 257
           +KV+CFGG QEVSFFHEYR GVDWVFVDHPSYHRPGNPYGDG GAFGDNQFRFT+LCHAA
Sbjct: 121 IKVHCFGGVQEVSFFHEYRAGVDWVFVDHPSYHRPGNPYGDGYGAFGDNQFRFTLLCHAA 180

Query: 258 CEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNLAHQG 317
           CEAPLVLPLGG+TYGEKCLFL NDWHASLVPVLLAAKY P GVYKDAR+VLVIHNLAHQG
Sbjct: 181 CEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVYKDARTVLVIHNLAHQG 240

Query: 318 VEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVSK 374
           VEPAVTY N GLPPEWYGA+EWVFPTWARTHALDTG+AVN+LKGAIVT DRILTVSK
Sbjct: 241 VEPAVTYDNLGLPPEWYGAVEWVFPTWARTHALDTGQAVNLLKGAIVTVDRILTVSK 297


>GSVIVT01011429001 assembled CDS
          Length = 788

 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 132/240 (55%), Gaps = 20/240 (8%)

Query: 136 SIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLN 195
           +I+ V AE AP+SKTGGLGDV G+LP ALA RGHRVMVV+PRY        N   A +  
Sbjct: 315 NIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRY-------GNYAEAQETG 367

Query: 196 CRVKVYCFGGAQEVSFFHEYREGVDWVFVD-HPSYHRPGNPYGDGRGAFGDNQFRFTVLC 254
            R K    G   EV++F  Y +GVD+VF+D H   H   N YG  R    D   R  + C
Sbjct: 368 VRKKYKVDGQDMEVTYFQAYIDGVDFVFIDSHMFRHIEKNIYGGNR---MDILKRMVLFC 424

Query: 255 HAACEAPLVLPLGGYTYGEKCL-FLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
            AA E P  +P GG  YG+  L F+ANDWH +L+PV L A Y   G+ +  RS LVIHN+
Sbjct: 425 KAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSALVIHNI 484

Query: 314 AHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVS 373
           AHQG  P   +   GLP  +    +   P          GE  NI    + TADR++TVS
Sbjct: 485 AHQGRGPVEDFSYTGLPEHYLDLFKLYDPV--------GGEHFNIFAAGLKTADRVVTVS 536


>GSVIVT01019680001 assembled CDS
          Length = 659

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/255 (38%), Positives = 140/255 (54%), Gaps = 25/255 (9%)

Query: 132 RVKHSIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRY-LHGSPQDKNLVN 190
           R   ++VFV  E  P+SKTGGLGDV G LP A+A+RGHRVM VSPRY  +    D  +V 
Sbjct: 130 RSGMNLVFVGCEVGPWSKTGGLGDVLGGLPPAMAARGHRVMSVSPRYDQYKDAWDTCVVV 189

Query: 191 AVDLNCRVKVYCFGGAQEVSFFHEYREGVDWVFVDHP-----SYHRPGNP-YGDGRGA-F 243
            + +  R+        + V FFH Y+ GVD VFVDHP      + + G+  YG   G  +
Sbjct: 190 EIPVGDRI--------ETVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGSKIYGPSAGVDY 241

Query: 244 GDNQFRFTVLCHAACEAPLVLPLGGYT-----YGEKCLFLANDWHASLVPVLLAAKYHPF 298
            DNQ RF++ C A  EAP +L L         YGE  +F+ANDWH +++P  L + Y   
Sbjct: 242 IDNQMRFSLFCQAVLEAPRILNLNSSKYFSGPYGEDVVFIANDWHTAILPCYLKSMYQSS 301

Query: 299 GVYKDARSVLVIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNI 358
           G+Y++A+ V  IHN+A+QG      +    LP  +  + +++            G  +N 
Sbjct: 302 GIYRNAKVVFCIHNIAYQGRFAFSDFGFLNLPDRFKSSFDFM----DGYKKPVKGRKINW 357

Query: 359 LKGAIVTADRILTVS 373
           +K  I+ ADR++TVS
Sbjct: 358 MKAGILEADRVVTVS 372


>GSVIVT01027437001 assembled CDS
          Length = 614

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/253 (38%), Positives = 136/253 (53%), Gaps = 29/253 (11%)

Query: 136 SIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLN 195
           S++FV  E  P+SKTGGLGDV G LP A+++ GHRVM VSPR+           +A D  
Sbjct: 89  SLIFVGTEVGPWSKTGGLGDVLGGLPPAMSANGHRVMTVSPRF-------DQYKDAWDTG 141

Query: 196 CRVKVYCFGGAQEVSFFHEYREGVDWVFVDHP-----SYHRPGNP-YGDGRGA-FGDNQF 248
             V++      ++V FFH Y+ GVD VFVDHP      + + G+  YG   G  F DNQ 
Sbjct: 142 VTVQLNVGDRFEKVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGSKLYGPLAGEDFQDNQL 201

Query: 249 RFTVLCHAACEAPLVLPLGGYT-----YGEKCLFLANDWHASLVPVLLAAKYHPFGVYKD 303
           RF++LC AA EAP +L L         YGE  +F+ANDWH + +   L   Y   G Y +
Sbjct: 202 RFSLLCQAALEAPRILNLKSSKYFSGPYGEDVVFIANDWHTAPLACYLKTMYRLKGRYGN 261

Query: 304 ARSVLVIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALD---TGEAVNILK 360
           A+ V  IHN+A+QG      +    LP E+  + ++       T   +    G  +N +K
Sbjct: 262 AKVVFCIHNIAYQGRFAFADFSLLNLPDEFKSSFDF-------TDGYEKPVKGRKINWMK 314

Query: 361 GAIVTADRILTVS 373
             I+ AD++LTVS
Sbjct: 315 AGILEADKVLTVS 327


>GSVIVT01021404001 assembled CDS
          Length = 1011

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 105/245 (42%), Gaps = 24/245 (9%)

Query: 132 RVKHSIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNA 191
           R +  ++ + AE AP +K GGLGDV   L  AL  +GH V +V P+Y     Q   + + 
Sbjct: 511 RSRLHVIHIAAEMAPVAKVGGLGDVVSGLSRALQKKGHLVEIVLPKY--DCMQYDRIRDL 568

Query: 192 VDLNCRVKVYCFGGAQEVSFFHEYREGVDWVFVD--HPS-YHRPGNPYGDGRGAFGDNQF 248
             L+  ++ Y  G       +    EG+   F++  HPS +   G  YG+      D+  
Sbjct: 569 RVLDMELESYFDGRLFRNKVWVGTVEGLPVYFIEPHHPSKFFWRGTVYGE-----HDDFR 623

Query: 249 RFTVLCHAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVL 308
           RF+    AA E  L+L  G       C    +DW  + V  L    Y P G+   AR   
Sbjct: 624 RFSYFSRAALE--LLLQAGKKPDIIHC----HDWQTAFVAPLYWDLYAPKGL-NSARICF 676

Query: 309 VIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADR 368
             HN  +QG  PA    + GL        +       R       + VN +KGAIV ++ 
Sbjct: 677 TCHNFEYQGTAPASEMASCGLDVHHLNRPD-------RMQDNSAHDRVNPVKGAIVFSNI 729

Query: 369 ILTVS 373
           + TVS
Sbjct: 730 VTTVS 734


>GSVIVT01032233001 assembled CDS
          Length = 608

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 137 IVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNC 196
           I+ VTAE AP +K GGLGDV   L  A  SR H+V ++ P Y       +  ++ ++L  
Sbjct: 110 IIHVTAEMAPIAKVGGLGDVVTGLARACLSRAHKVDIMLPFY---ECIQREQISELELIT 166

Query: 197 RVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSYHRPGNPYGDGRGAFGD--NQFRFTVLC 254
             + Y  G     + +     G+  +F+      +P N +  G+  +G   N+    +  
Sbjct: 167 TYESYYDGNWVPTNAYRGVVSGIPVIFI------QPSNYFFKGQYVYGGSYNELEAYLYF 220

Query: 255 HAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNLA 314
             AC     L     T  +  +   ++W    +P+L    YH   + K  R VL IHN+ 
Sbjct: 221 SRAC-----LEWMQVTGTQPDIIHIHEWQTGSLPLLYWDMYHYLSL-KKPRIVLTIHNME 274

Query: 315 HQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVS 373
           H G          GL    Y  L+         H     E +++LKG IV ++ ++TVS
Sbjct: 275 HYGECRKEELSKCGLDGSIYATLDKAVDDRTIGH---NPERLSLLKGGIVYSNVVITVS 330


>GSVIVT01012723001 assembled CDS
          Length = 1046

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 22/179 (12%)

Query: 137 IVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNC 196
           IV +  E AP +K GGLGDV  SL  A+    H V ++ P+Y        NL N  D   
Sbjct: 600 IVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHHVDIILPKY-----DCLNLSNVKDFQY 654

Query: 197 RVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSYHRPGNPYGDGRGAFG--DNQFRFTVLC 254
           + + Y +GG  E+  +    EG+   F++      P N +      +G  ++  RF   C
Sbjct: 655 K-RCYFWGGT-EIKVWFGKVEGLSVYFLE------PQNGFFSAGCIYGCRNDGERFGFFC 706

Query: 255 HAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
           HAA E   +L  G +     C    +DW ++ V  L    Y  +G+ K AR V  IHNL
Sbjct: 707 HAALE--FLLQSGFHPDIIHC----HDWSSAPVSWLFKDHYKHYGLSK-ARVVFTIHNL 758