Jatropha Genome Database

JcCB0018201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018201.10 - phase: 0 /pseudo
         (349 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030530001 assembled CDS                                       220   6e-58

>GSVIVT01030530001 assembled CDS
          Length = 432

 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 135/175 (77%)

Query: 175 LAPNQLVEDYIKAFVHKWPVPAIVVPGGHPRMKYDAFNASTVALCTSGTVAVELQLARLP 234
           +APNQ V+DYI    + WPV   ++PGG P +KYDA +AS VALCTSGTVAVE+QLARLP
Sbjct: 257 VAPNQHVKDYISRTTYNWPVSVKLIPGGSPHLKYDALSASRVALCTSGTVAVEMQLARLP 316

Query: 235 CVVAYRAHLLTESFIQYKAKIPYISLPNILMDSAIIPEALFHACTPTNLASLLKELMHNK 294
           CVVAYRAH LTE FI +KAKIP+IS+PNIL+DSAIIPEAL  ACTP  LASLL +L  ++
Sbjct: 317 CVVAYRAHFLTEWFICWKAKIPFISIPNILLDSAIIPEALLQACTPAKLASLLMKLTLDE 376

Query: 295 ELQEKQIVAAEKVISLLFPSERIIYNSAEQVKERSFSSFSPSIMAASTILWHVKP 349
            L+EKQIVAAEKV+SLL P ++II N   Q        ++PS++ ASTIL++ KP
Sbjct: 377 GLREKQIVAAEKVLSLLSPPQKIIENRMPQDLRWKSPDYTPSMIGASTILYYAKP 431