Jatropha Genome Database

JcCB0017941.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.30 + phase: 0 
         (388 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028077001 assembled CDS                                       381   e-106
GSVIVT01004748001 assembled CDS                                       110   1e-24

>GSVIVT01028077001 assembled CDS
          Length = 287

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 239/289 (82%), Gaps = 4/289 (1%)

Query: 97  MDIPPIVTILLVGFSSSGKSSLVNLMYSVLGRTGLVLFAQTKSGSGKKNYTTMFMEEHNV 156
           MDIPP++TILLVGFS SGKSSLVNLMYSVLGR+GL+ FA T S +  K  TT FMEEHNV
Sbjct: 1   MDIPPVITILLVGFSGSGKSSLVNLMYSVLGRSGLIPFATTSSENSAK-CTTKFMEEHNV 59

Query: 157 LRSIKSGFCVYDSRGFNYDKVGEALEELSSWMSDGVHHNQLCLRSGDHNVLLKDIDAEQL 216
           LRS++SGFCVYDSRG +YD +GE++EE+S WM++GVHHNQLCLR+GD+  L+ + +  ++
Sbjct: 60  LRSMQSGFCVYDSRGLDYDLMGESIEEVSEWMTNGVHHNQLCLRTGDN--LMSEEELSEV 117

Query: 217 SSRNSSKFIQRRVNCAMVVVNVAEVYKALKAGDSKPLEATKELFCSSALRNCNENPILIL 276
              +SSKF  R+VNCAMVVVN+AE++K+LK GD KPLEAT+ELF   AL+ CNENPILI+
Sbjct: 118 PG-SSSKFTPRKVNCAMVVVNIAEIFKSLKKGDWKPLEATRELFRCPALKKCNENPILIM 176

Query: 277 THGDLLTSEERIEGRLKICESLGISETNGIYDVVCLTEYGFLAEESDPVSAYNVAEAVYR 336
           THGDLL++EERI+ RL +CE LGISET G+YD+VCLTEYGFLA+ESDPV++Y ++EAVYR
Sbjct: 177 THGDLLSTEERIKIRLTLCEFLGISETTGVYDIVCLTEYGFLADESDPVTSYALSEAVYR 236

Query: 337 ALLISDREHLPKKTLQDWTLFILSWLMSLMAIFFAFLAQICSALGHSNK 385
           ALLISDR H+PK+++ DWTL  L+ LM  +A FF FLA+  S LG   K
Sbjct: 237 ALLISDRGHIPKRSILDWTLLALALLMCYLAAFFEFLAEFFSKLGQKKK 285


>GSVIVT01004748001 assembled CDS
          Length = 384

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 9/250 (3%)

Query: 65  IAHEGLNELRYKLQIYRSGDYWVPTGGLKKEEMDIPPIVTILLVGFSSSGKSSLVNLMYS 124
           I    L + + ++  Y  G +   +GG+K  + ++P   +++LVG   SGKSSL+N +  
Sbjct: 47  IRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSLILVGPKGSGKSSLINKISR 106

Query: 125 VLGRTGLVLFAQTKSGSGKKNYTTMFMEEHNVLRSIKSGFCVYDSRGFNYDKVGEALEEL 184
           V             S +      T F++E+ + R   + FC+YD+RG + D   + ++ L
Sbjct: 107 VFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRG-STSFCLYDTRGLS-DVSSDNMQML 164

Query: 185 SSWMSDGVHHNQLCLRSGDHNVLLKDIDAE-QLSSRNSSKFIQRRVNCAMVVVNVAEVYK 243
             W++ GV H +L +R+ D   +   +  + + S  NSSK   R VN  + VVN   V K
Sbjct: 165 KHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSK--TRLVNFVIFVVNGLSVLK 222

Query: 244 ALKAGDSKP----LEATKELFCSSALRNCNENPILILTHGDLLTSEERIEGRLKICESLG 299
           ++ + D       ++   E+FC   L   ++ P++++THGDLL+  +R   R+ + E LG
Sbjct: 223 SIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSLSDRARVRVHLGEHLG 282

Query: 300 ISETNGIYDV 309
           IS    I+D+
Sbjct: 283 ISPGKQIFDI 292