Jatropha Genome Database

JcCB0017941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.20 - phase: 0 
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031184001 assembled CDS                                       174   1e-44
GSVIVT01026787001 assembled CDS                                        77   2e-15
GSVIVT01021982001 assembled CDS                                        61   1e-10
GSVIVT01017980001 assembled CDS                                        59   7e-10
GSVIVT01031504001 assembled CDS                                        55   7e-09
GSVIVT01017720001 assembled CDS                                        47   1e-06

>GSVIVT01031184001 assembled CDS
          Length = 114

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 96/101 (95%)

Query: 15  EYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAAAAKIGKIL 74
           ++LKPYVLKMHFTNK+V+AQVIHSPTATVA +ASSQEK LRS+ME+TRDVAAAA IGKIL
Sbjct: 14  KFLKPYVLKMHFTNKFVNAQVIHSPTATVASAASSQEKTLRSTMESTRDVAAAAMIGKIL 73

Query: 75  AERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKLL 115
            ERLL++DIPAV+VFLKR+QKYHGKVKAV+D++R+ G+KLL
Sbjct: 74  GERLLLQDIPAVTVFLKRDQKYHGKVKAVIDSLREVGIKLL 114


>GSVIVT01026787001 assembled CDS
          Length = 197

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 68/109 (62%)

Query: 4   PPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD 63
           P    W  +   Y++P++L + F+ +++ A+V+H PT+ V   A++  K LR+++ +  D
Sbjct: 86  PSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDLRNTLSSLTD 145

Query: 64  VAAAAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGV 112
             A   IGK++AER +  D+ A+S   +++++  GK+  V+D ++++G+
Sbjct: 146 HNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGI 194


>GSVIVT01021982001 assembled CDS
          Length = 187

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 60/108 (55%)

Query: 7   VKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAA 66
           + +  R   Y++P+ L +  + ++VSA + H  T+     A +  K +++ +++  D+ A
Sbjct: 75  ISFKQRTGAYMEPFTLDVLISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLKSRSDIPA 134

Query: 67  AAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
              IG+IL+ER    D+   S   +   K+ GK++AVV ++ D+G+ +
Sbjct: 135 CLAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDV 182


>GSVIVT01017980001 assembled CDS
          Length = 348

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query: 16  YLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAAAAKIGKILA 75
           Y +P+ L +  +   V A +IH  T+ V   A S  K ++  + +TR+V A A +G+ILA
Sbjct: 227 YHEPFCLDIFISKGSVRACIIHRVTSKVVAVAHSISKDMKFDLTSTRNVTACAAVGRILA 286

Query: 76  ERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
           +R L  DI       ++  K  GK++ V+ ++ D+GV +
Sbjct: 287 QRALADDIHDTVYTPRKGDKLEGKLQIVLQSIIDNGVNV 325


>GSVIVT01031504001 assembled CDS
          Length = 127

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 12/111 (10%)

Query: 17  LKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTR--DVAAAAKIGKIL 74
           LK YVL++  + KY++A V+      +  +AS+ E A++ S+E  R  +  AA  +G++L
Sbjct: 4   LKRYVLRLFISLKYITANVVDRNNGRIIATASTVEHAIKGSLECGRSCNAKAAGVVGEVL 63

Query: 75  AERLLVKDIP-----AVSVFLKREQKYHG-----KVKAVVDAVRDSGVKLL 115
           A RL V+ +       + V + +E +  G     K+ AVV+ ++++G+KL+
Sbjct: 64  AMRLKVEGLEEGQGRGIHVDVNKEVEKKGFKNRTKIWAVVNGLKNNGIKLI 114


>GSVIVT01017720001 assembled CDS
          Length = 161

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 27  TNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD--VAAAAKIGKILAERLLVKDIP 84
           +NK++  QVI         SAS+ +K++   ++ +    +  A K+G+++A   L K I 
Sbjct: 73  SNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGIT 132

Query: 85  AVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
            V+ F +    YHG+VKA+ DA R+ G++ 
Sbjct: 133 KVA-FDRGGYPYHGRVKALADAAREKGLQF 161