Jatropha Genome Database

JcCB0017431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017431.10 - phase: 0 
         (540 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007928001 assembled CDS                                       223   2e-58
GSVIVT01011506001 assembled CDS                                       203   2e-52
GSVIVT01027004001 assembled CDS                                       130   2e-30
GSVIVT01019386001 assembled CDS                                       124   8e-29
GSVIVT01012197001 assembled CDS                                        81   1e-15
GSVIVT01034007001 assembled CDS                                        59   6e-09

>GSVIVT01007928001 assembled CDS
          Length = 432

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 182/339 (53%), Gaps = 29/339 (8%)

Query: 1   MGFKRPFDSDEFQELPFKQARQLDFGNNLTQFAHL--YKTTSLALDVTDDYDRGFVKSQH 58
           M  KR FD +E  E+  K  RQL+  ++L  F     +        V  + +    K++ 
Sbjct: 1   MVQKRSFDDEELYEISSKHPRQLEHNHHLISFLEFVPFDDPLQKPRVQGEGELLKCKTEG 60

Query: 59  HHTFENNTVFEVPNFSRDIEI-----XXXXXXXXXXXXDEDVGSRAAAAAYPYSQGHSEF 113
                +    + P  ++D E                  ++D  S A      + +  S  
Sbjct: 61  DEKLLSGFCTDFPISAKDTETFMRGCISTSSWATSSTSEDDARSEAPIDVSLFPEYFSSD 120

Query: 114 DFPRRFVPFEDAYCSYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLV 173
              R     +D Y S LD  PR+ VP+G +HQ  +P W   L+                 
Sbjct: 121 SPVRASNDSDDYYLSLLDYPPRKSVPIGSDHQVDVPAWSQGLEL---------------- 164

Query: 174 SESNNDIYNDNEERMMGTCIMPMPDAESSENKNNEAGNGRTDCCCLDEGSVRCVRQHVME 233
                 + N +E+R++GTC+MPMP +E   N +   GNGRTDC C D GS RCVRQH+ E
Sbjct: 165 -----SVGNIDEKRLIGTCVMPMPKSEPFCN-DAVVGNGRTDCSCHDRGSYRCVRQHIAE 218

Query: 234 AREKLKNSLGYEKFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQV 293
           AREKL+ +LG E+F  LGF+DMGEEV  KW+EE+++ FH VV+SNP S G+NFW  LS V
Sbjct: 219 AREKLRGTLGEERFVKLGFHDMGEEVAEKWNEEEEQLFHEVVFSNPVSLGKNFWDNLSLV 278

Query: 294 FATRSTKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDE 332
           F +R+T+EIVSYYFNVFMLR+RA QNR +  +IDSD+DE
Sbjct: 279 FPSRTTREIVSYYFNVFMLRKRAEQNRYDPENIDSDNDE 317



 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 492 AVDHDHVYLLDPCDAKAWDARYTVPIK-GVELLPTCNMIEEIFGQGTSS 539
           A + DH Y L+PCDAK WDA Y    K  V+LL TC+MIEE+FG GT +
Sbjct: 339 AGNGDHWYALEPCDAKVWDAGYVTCSKTKVDLLSTCSMIEEVFGAGTGT 387


>GSVIVT01011506001 assembled CDS
          Length = 372

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/344 (38%), Positives = 184/344 (53%), Gaps = 27/344 (7%)

Query: 1   MGFKRPFDSDEFQELPFKQARQLDFGNNLTQFAHLY------KTTSLALDVTDDYDRGFV 54
           M  KRPF  +E   +  K +RQL+  N+L   A +       + T L+    +D    F 
Sbjct: 1   MVHKRPFGDEETSNVACKHSRQLEHTNHLVSSAGVVPCNIAPQRTQLSDGEGED---SFS 57

Query: 55  KSQHHHTFENNTVFEVPNF-SRDIEIXXXXXXXXXXXXDED-VGSRAAAAAYPYSQGHSE 112
           KSQ       + V +V N  ++D E             +   +    + AA+  S     
Sbjct: 58  KSQDEGRNAIDLVTDVSNGPAKDFETSALGSISGFLWLNSSTIEEDKSEAAFHLSFFPEY 117

Query: 113 FDF---PRRFVPFEDAYCSYLDRSPRRQVPLGPNHQASIPIWGGHL-KNPLEREGSFNPN 168
           F+     R  +  ED + S LD  P++ V +GP HQA IP W   L +N L+        
Sbjct: 118 FEADHGVRAVIQHEDIFSSLLDHPPQKLVSIGPEHQALIPEWAPQLLENSLD-------- 169

Query: 169 SYSLVSESNNDIYNDNEERMMGTCIMPMPDAESSENKNNEAGNGRTDCCCLDEGSVRCVR 228
                S+++  +    EE +MGT ++PMPD E       + G    +C CL  GS+ C R
Sbjct: 170 ----YSDTSGFMNGGKEEELMGTIVIPMPDWEPLAYNFCKGGGIGNECNCLHVGSISCTR 225

Query: 229 QHVMEAREKLKNSLGYEKFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWK 288
           QHVMEAR++L+ +LG + FE LGF DMGEEV  KWSE+++ AF  VV S PAS  +NFW 
Sbjct: 226 QHVMEARQRLRENLGQDMFEKLGFCDMGEEVADKWSEDEEHAFDEVVLSYPASLDKNFWD 285

Query: 289 QLSQVFATRSTKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDE 332
            LS +F +R+ K++VSYYFNVFMLR+RA QNR + L+IDSD+DE
Sbjct: 286 HLSGIFPSRTKKDLVSYYFNVFMLRKRAEQNRFDPLNIDSDNDE 329


>GSVIVT01027004001 assembled CDS
          Length = 594

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 110/199 (55%), Gaps = 29/199 (14%)

Query: 136 RQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEERMMGTCIMP 195
           R+ P+GP  QA+IP W G                  +VSE ++        + +GT + P
Sbjct: 388 RKRPVGPAFQATIPEWTG------------------VVSEIDS--------KWLGTRVWP 421

Query: 196 MPDAESS-ENKNNEAGNGRTDCC-CLDEGSVRCVRQHVMEAREKLKNSLGYEKFEHLGFY 253
           +   E     + +  G GR D C C   GS+ CV+ HV E R ++K  LG   F+H  F 
Sbjct: 422 LDKIEHKFLIERDPIGKGRQDSCGCQFPGSIACVQFHVAEKRIRIKLELG-SAFQHWQFD 480

Query: 254 DMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRSTKEIVSYYFNVFMLR 313
            MGE V   WSEE+++ F  +V  NP S G  FW ++ + F+T+S +++VSYYFNVF+L+
Sbjct: 481 KMGEVVGLSWSEEEKKRFKEIVRLNPPSMGVRFWDEIFKSFSTKSREDLVSYYFNVFLLQ 540

Query: 314 RRAAQNRSNLLDIDSDDDE 332
           RRA QNR    +IDSDDDE
Sbjct: 541 RRADQNRLTPNNIDSDDDE 559


>GSVIVT01019386001 assembled CDS
          Length = 532

 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 29/201 (14%)

Query: 136 RQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEERMMGTCIMP 195
           + +P+GPN QA +P W G                   V+ES++        + +GT + P
Sbjct: 326 KPIPVGPNFQAEVPEWTGE------------------VTESDS--------KWLGTQVWP 359

Query: 196 MPDAESS-ENKNNEAGNGRTDCC-CLDEGSVRCVRQHVMEAREKLKNSLGYEKFEHLGFY 253
           + + E S   + +  G G+ D C C   GSV CVR H+ E R KLK  LG   F H  F 
Sbjct: 360 LENGECSFRIEKDCVGRGKPDSCDCRFSGSVECVRFHIAEKRMKLKLDLG-SLFYHWRFD 418

Query: 254 DMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRSTKEIVSYYFNVFMLR 313
            MGEE++  W+ E+++ F  ++  N +    +FW    ++F T++ + +VSYYFNVF++R
Sbjct: 419 RMGEEISLAWTTEEEKRFKHMIRLNSSLQSPSFWDNALRIFPTKTREALVSYYFNVFLIR 478

Query: 314 RRAAQNRSNLLDIDSDDDELH 334
           RR  QNR     IDSDDDEL 
Sbjct: 479 RRIYQNRVTPRKIDSDDDELE 499


>GSVIVT01012197001 assembled CDS
          Length = 554

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 1   MGFKRPFDSDEFQELPFKQARQLDFGNNLTQFAHLY--KTTSLALDVTDDYDRGFVKSQH 58
           MG KR F+++EFQELPFK  + ++  + L  F  +   K      D++D+    F K Q 
Sbjct: 93  MGLKRSFENEEFQELPFKNMKCVESRDKLASFGEIVPCKDAPQKPDISDECS--FYKFQC 150

Query: 59  HHTFENNTVFEVPNFSRDIEIXXXXXXXXXXXXDEDVGSRAAAAAYP-YSQGHSEFDFPR 117
                 N V  + +  +  EI            D     R+ AAAY   S  + E   PR
Sbjct: 151 GTEGVENGVSVLDD--KGFEISAPLSCNGSSEED----GRSVAAAYSSLSPEYFESYLPR 204

Query: 118 RFVP-FEDAYCSYLDRSPRRQVPLGPNHQASIPIWG-GHLKNPLER 161
           R V  FED Y S LD SPRRQVP+GP+HQA++P+W    +KN L++
Sbjct: 205 RTVAQFEDIYSSLLDCSPRRQVPVGPDHQANVPVWSLQKVKNRLDK 250


>GSVIVT01034007001 assembled CDS
          Length = 84

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%)

Query: 277 SNPASFGQNFWKQLSQVFATRSTKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDELHGI 336
           SNP S    FWK   + F  +  K IVSYYFNVF+ R  + Q RS+L  +D+D+DE   +
Sbjct: 3   SNPLSNEVKFWKHAFKCFPNKCRKSIVSYYFNVFLPRHISLQTRSSLKQVDTDEDEAEDV 62

Query: 337 N 337
           N
Sbjct: 63  N 63