Jatropha Genome Database
- JcCB0017171.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0017171.20 + phase: 2 /pseudo/partial
(184 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01032309001 assembled CDS 211 2e-55
GSVIVT01033170001 assembled CDS 185 8e-48
GSVIVT01025208001 assembled CDS 160 4e-40
GSVIVT01007785001 assembled CDS 158 2e-39
GSVIVT01032502001 assembled CDS 150 4e-37
GSVIVT01025696001 assembled CDS 149 8e-37
GSVIVT01023608001 assembled CDS 145 9e-36
GSVIVT01028711001 assembled CDS 140 3e-34
GSVIVT01015970001 assembled CDS 135 9e-33
GSVIVT01027087001 assembled CDS 132 8e-32
GSVIVT01029407001 assembled CDS 120 3e-28
GSVIVT01029404001 assembled CDS 115 1e-26
GSVIVT01011487001 assembled CDS 94 5e-20
>GSVIVT01032309001 assembled CDS
Length = 709
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 123/149 (82%), Gaps = 3/149 (2%)
Query: 27 KTGYKIP---KFGRFKLFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFY 83
++ KIP KFGR K+FPE+HE RK+ILDPGS++ LQW+RVF+ SCLVALFVDPL+FY
Sbjct: 50 RSRNKIPETLKFGRSKVFPEDHEPWRKQILDPGSELVLQWSRVFIVSCLVALFVDPLYFY 109
Query: 84 LPTVIRHGATSCMHVDLNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELV 143
LP V + + C+ DLNL I VTCFRT AD Y+LH+++KFRTAYVAPSSRVFGRGELV
Sbjct: 110 LPAVGGNEGSWCIKTDLNLRIVVTCFRTIADFFYLLHMIIKFRTAYVAPSSRVFGRGELV 169
Query: 144 MDLDKIARRYLKSDFFIDLIAALPLPQVL 172
MD KIA+RY++SDFFIDL+A LPLPQ++
Sbjct: 170 MDPKKIAQRYIRSDFFIDLVATLPLPQIV 198
>GSVIVT01033170001 assembled CDS
Length = 664
Score = 185 bits (470), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 112/173 (64%), Gaps = 32/173 (18%)
Query: 3 ENHQTGKPFSVYKIPKT---EGGVSDPKTGYKIPKFGRFKLFPENHESRRKRILDPGSDV 59
E+ +P S +P EG + Y FGRFK+FPE+HE RKRILDPGSD+
Sbjct: 33 ESQPVERPVSYKVLPSLLNPEGRAGEKNRTYGTLSFGRFKVFPESHEPWRKRILDPGSDI 92
Query: 60 FLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRTFADIIYIL 119
FLQWNRVFLFSCLVALFVDPLFFYLPTV+ G +SC
Sbjct: 93 FLQWNRVFLFSCLVALFVDPLFFYLPTVVGDGNSSC------------------------ 128
Query: 120 HIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQVL 172
FRTAYV+PSSRVFGRGELVMD +IARRYLKSDFFIDL+A LPLPQ++
Sbjct: 129 -----FRTAYVSPSSRVFGRGELVMDPKEIARRYLKSDFFIDLVATLPLPQIV 176
>GSVIVT01025208001 assembled CDS
Length = 697
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 121/190 (63%), Gaps = 17/190 (8%)
Query: 1 FNENHQTGKPFSVYKIPKTE-GGVSDPKTGYKIP-KFGRF-------KLFPENHESRRKR 51
F + GK YKI T+ S K G ++ K GR ++F E++E +++
Sbjct: 20 FPATNGDGKIKMKYKIDGTQIQEASYKKAGKEVSGKSGRSLKAKVLSRVFSEDYERVKQK 79
Query: 52 ILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRT 111
ILDP +WN++FL +CL++LFVDPLFFYLP V CM +++ L + +T R+
Sbjct: 80 ILDPRGKSIRRWNKIFLVACLISLFVDPLFFYLPDV---RDKVCMDIEIPLEVVLTIIRS 136
Query: 112 FADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQV 171
ADI Y++ I V+FRTAYVAPSSRVFGRGELV+D KIA RYL F+IDLIAALPLPQV
Sbjct: 137 IADIFYMIQIFVRFRTAYVAPSSRVFGRGELVIDTSKIALRYLGKGFWIDLIAALPLPQV 196
Query: 172 LFLTGFIWIM 181
L IWI+
Sbjct: 197 L-----IWII 201
>GSVIVT01007785001 assembled CDS
Length = 637
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 95/132 (71%), Gaps = 3/132 (2%)
Query: 41 FPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDL 100
F +S +ILDPG + QWN +FL SCL+ALF+DPL+FYLP + +C +DL
Sbjct: 8 FSFRQKSWWTQILDPGGRLVTQWNHIFLISCLLALFLDPLYFYLPVI---DGPACFRIDL 64
Query: 101 NLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFI 160
LGI VT FRT AD+ Y+ H+++KFR A+VAPSSRVFGRGELVMD +IA RYLKSDF I
Sbjct: 65 GLGIVVTFFRTVADMFYLTHMIMKFRMAFVAPSSRVFGRGELVMDPQQIALRYLKSDFII 124
Query: 161 DLIAALPLPQVL 172
D A LPLPQ +
Sbjct: 125 DFAATLPLPQTV 136
>GSVIVT01032502001 assembled CDS
Length = 685
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 92/123 (74%), Gaps = 3/123 (2%)
Query: 49 RKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTC 108
R +IL+P D+ WN VFL + L++LF+DPL+F+LP+V G +C+ D +LGI VT
Sbjct: 36 RYQILEPDGDIVTYWNHVFLVTSLISLFLDPLYFFLPSV---GGPACLTSDTSLGIVVTF 92
Query: 109 FRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPL 168
FRT +D+ Y+LH+V+KFRTA+VAPSSR GRGELVMD IA RYLKSDF IDL A LPL
Sbjct: 93 FRTVSDLFYLLHMVMKFRTAFVAPSSRGLGRGELVMDAHTIAMRYLKSDFIIDLAATLPL 152
Query: 169 PQV 171
PQ
Sbjct: 153 PQA 155
>GSVIVT01025696001 assembled CDS
Length = 678
Score = 149 bits (376), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 99/134 (73%), Gaps = 3/134 (2%)
Query: 39 KLFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHV 98
++F E++E +K+I DP V +WN++FL SCL++LFVDPLFFYLP ++ G CM +
Sbjct: 64 RVFSEDYEVVKKKIFDPRGPVKNRWNKIFLVSCLISLFVDPLFFYLPG-MKKGM--CMDI 120
Query: 99 DLNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDF 158
+L I +T R+ D Y++ I V+FRTAYVAPSSRVFGRGELV+D KIA RYL DF
Sbjct: 121 SQSLEIALTVVRSTVDTFYMIQIFVRFRTAYVAPSSRVFGRGELVIDPSKIASRYLHKDF 180
Query: 159 FIDLIAALPLPQVL 172
++DL+AA+P PQ+L
Sbjct: 181 WLDLVAAVPFPQML 194
>GSVIVT01023608001 assembled CDS
Length = 743
Score = 145 bits (367), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
Query: 40 LFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVD 99
+FPE+ + K+I DP WN++F+ SC++A+ VDPLFFYLP + ++ C+ +D
Sbjct: 86 VFPEDLKVSEKKIFDPQHKFLQLWNKLFVISCILAVSVDPLFFYLPVI--DSSSKCLGID 143
Query: 100 LNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFF 159
L IT T RT D Y++H+ ++FRTAY+APSSRVFGRGELV+D +IA+RYL++ F
Sbjct: 144 RKLAITATTLRTIIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPARIAKRYLRTYFI 203
Query: 160 IDLIAALPLPQVL 172
ID +A LPLPQ++
Sbjct: 204 IDFLAVLPLPQIV 216
>GSVIVT01028711001 assembled CDS
Length = 709
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 93/132 (70%), Gaps = 7/132 (5%)
Query: 50 KRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCF 109
K+ILDP +WN++F+ SC++A+ +DPLFFY+P + + C+ +D +L IT +
Sbjct: 79 KKILDPQGPFLQKWNKIFVLSCIIAVSLDPLFFYIPVIDK--LKKCLSLDESLQITASVL 136
Query: 110 RTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLP 169
R+F DI YILHI+ +FRT ++APSSRVFGRG LV D IARRYL S F ID++A LPLP
Sbjct: 137 RSFTDIFYILHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLIDILAVLPLP 196
Query: 170 QVLFLTGFIWIM 181
QV+ IWI+
Sbjct: 197 QVV-----IWII 203
>GSVIVT01015970001 assembled CDS
Length = 719
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 40 LFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVD 99
+FPE+ + K+I DP L WNR+F+ SC++A+ VDPLFFYLP V +SC+ +D
Sbjct: 85 MFPEDLKVSEKKIFDPQDKSLLLWNRLFVISCILAVSVDPLFFYLPIVDHQ--SSCLGID 142
Query: 100 LNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFF 159
NL +T T RT D Y++ + +FRTAY+APSSRVFGRGELV+D +IA+RYL+ FF
Sbjct: 143 PNLAVTTTTVRTIIDAFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPAEIAKRYLQRFFF 202
Query: 160 IDLIAALPLPQVL 172
ID +A PLPQ++
Sbjct: 203 IDFLAVFPLPQII 215
>GSVIVT01027087001 assembled CDS
Length = 1373
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 2/129 (1%)
Query: 46 ESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGIT 105
+S RK+ILDP +WN+VFL S ++A+ +DP FFY+P I H +C+ +D LG+
Sbjct: 75 KSPRKKILDPQGSFLQEWNKVFLISTVLAVALDPFFFYIP--ILHREETCLDLDTKLGVI 132
Query: 106 VTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAA 165
R+ DI YILHI+ +F T ++APSSRVFGRGELV IA+RYL + F ID+++
Sbjct: 133 ACVLRSIVDIFYILHIIFQFHTGFIAPSSRVFGRGELVEAPSAIAKRYLSTYFIIDILSI 192
Query: 166 LPLPQVLFL 174
LPLPQ++ L
Sbjct: 193 LPLPQLVIL 201
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
Query: 49 RKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTC 108
RK ILDP WN++FL SC++A+ +D FFY P + RH ++C+ +D L I
Sbjct: 731 RKTILDPEGSFLQTWNKIFLVSCVLAISLDAFFFYAPVINRH--STCLDLDDRLQIVACV 788
Query: 109 FRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPL 168
RT D+ YILHI+ +FRT +VAPSSRVFG G L+ D IA+RYL F ID+++ LPL
Sbjct: 789 LRTLIDVFYILHIIFQFRTGFVAPSSRVFGDGVLIDDSSVIAKRYLPY-FVIDILSILPL 847
Query: 169 PQV 171
PQV
Sbjct: 848 PQV 850
>GSVIVT01029407001 assembled CDS
Length = 775
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Query: 52 ILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRT 111
I++P + V QWNR F+ SCL+A+FVDPLFF L +V C+ +DL+L T+ FR+
Sbjct: 194 IMNPHTKVVQQWNRFFVISCLLAIFVDPLFFLLLSV--QQENKCIIIDLSLTKTIVAFRS 251
Query: 112 FADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQV 171
D IY+L+++++FR AYVAP SRV G G+LV KIA YL F IDL LPLPQ+
Sbjct: 252 MTDFIYLLNMLLQFRLAYVAPESRVVGAGDLVDHPKKIAIHYLHGYFLIDLFIVLPLPQI 311
Query: 172 LFL 174
+ L
Sbjct: 312 MIL 314
>GSVIVT01029404001 assembled CDS
Length = 777
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 52 ILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRT 111
I++P + V +WNR F+ SCL+A+FVDPLFF L +V C+ +D+ L T+ FR+
Sbjct: 194 IMNPHTKVVQRWNRFFVISCLLAIFVDPLFFLLLSV--QQENKCIIIDMPLTKTIVVFRS 251
Query: 112 FADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQV 171
D IY+L+++++FR AYVAP SRV G G+LV KIA YL F IDL LPLPQ+
Sbjct: 252 MTDFIYLLNMLLQFRLAYVAPESRVVGAGDLVDHPKKIAIHYLCGYFLIDLFIVLPLPQI 311
Query: 172 LFL 174
+ L
Sbjct: 312 MIL 314
>GSVIVT01011487001 assembled CDS
Length = 701
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 3/124 (2%)
Query: 52 ILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRT 111
+LDP + +WNR FL ++L VDPLFFY+ ++ G C+++D L VT RT
Sbjct: 98 VLDPRTKPVQRWNRAFLLVRGMSLAVDPLFFYVISIGGEGGP-CLYMDGGLAAIVTVLRT 156
Query: 112 FADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKS--DFFIDLIAALPLP 169
D +++ H+ ++FR AYV+ S V G G+LV D IA Y++S F+ DL LP+P
Sbjct: 157 CVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYVRSLKGFWFDLFVILPVP 216
Query: 170 QVLF 173
QV+F
Sbjct: 217 QVVF 220