Jatropha Genome Database

JcCB0017171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017171.10 + phase: 0 /TE
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033172001 assembled CDS                                       164   2e-41
GSVIVT01020220001 assembled CDS                                       152   1e-37
GSVIVT01031132001 assembled CDS                                        68   4e-12
GSVIVT01027997001 assembled CDS                                        63   8e-11
GSVIVT01038636001 assembled CDS                                        58   3e-09
GSVIVT01032633001 assembled CDS                                        57   5e-09
GSVIVT01033666001 assembled CDS                                        56   1e-08
GSVIVT01016195001 assembled CDS                                        51   3e-07

>GSVIVT01033172001 assembled CDS
          Length = 181

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 86/107 (80%), Gaps = 2/107 (1%)

Query: 1   MSRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDG 60
           MSRVYVGNLD RVTERELEDEFR FGVIRSVWVARRPPGYAFIDFDD+RDA+DAI ELDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDG 60

Query: 61  KNGWRVELSHN--SXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
           KNGWRVELSHN                  SDLKCYECGEPGHFAREC
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 107


>GSVIVT01020220001 assembled CDS
          Length = 182

 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 83/110 (75%), Gaps = 5/110 (4%)

Query: 1   MSRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDG 60
           MSRVYVGNLD RV+ERELEDEFR +GVIRSVWVARRPPGYAF++F D+RDA DAI  LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVYGVIRSVWVARRPPGYAFVEFADRRDAVDAIRGLDG 60

Query: 61  KNGWRVELSHNSX-----XXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
           K+GWRVELSHNS                     DLKCYECGEPGHFAREC
Sbjct: 61  KSGWRVELSHNSKGGGGGGGGGGGRDRGRGGGEDLKCYECGEPGHFAREC 110


>GSVIVT01031132001 assembled CDS
          Length = 249

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 6/73 (8%)

Query: 4  VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
          VYVGNL   + ERE+ED F ++G I  +   +  RPPGYAF++F+D RDAEDAI+  DG 
Sbjct: 9  VYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRDGY 68

Query: 62 N----GWRVELSH 70
          N      RVEL+H
Sbjct: 69 NFDGHRLRVELAH 81


>GSVIVT01027997001 assembled CDS
          Length = 264

 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 6/74 (8%)

Query: 4  VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
          +YVGNL   + ERE+ED F ++G I  +   +  RPPGYAF++F++ RDAEDAI   DG 
Sbjct: 9  LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGRDGY 68

Query: 62 N----GWRVELSHN 71
          +      RVEL+H 
Sbjct: 69 DFDGHRLRVELAHG 82


>GSVIVT01038636001 assembled CDS
          Length = 250

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 4  VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
          +YVGNL + + E E+ED F ++G I  V   +  RPP Y F++F++ RDAEDAI   DG 
Sbjct: 9  IYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRGRDGY 68

Query: 62 N----GWRVELSH 70
          N      RVEL+H
Sbjct: 69 NFDGCRLRVELAH 81


>GSVIVT01032633001 assembled CDS
          Length = 278

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 2   SRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
           +R+YVG L +R   R+LED F R+G +R V +      +AF++F D RDA+DA + L+G+
Sbjct: 43  TRLYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKH---DFAFVEFSDPRDADDARYSLNGR 99

Query: 62  --NGWR--VELSHNSXXXXXXXXX--XXXXXXSDLKCYECGEPGHFAREC 105
             +G R  VE +                       +C+ CG  GH+AR+C
Sbjct: 100 DFDGSRIIVEFAKGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDC 149


>GSVIVT01033666001 assembled CDS
          Length = 190

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 25/129 (19%)

Query: 2   SRVYVGNLDARVTERELEDEFRRFGVIRSVWV-----ARRPPGYAFIDFDDKRDAEDAIH 56
           +R++VG L    +ER LED F R+G I    V       RP G+ FI F D R  EDAI 
Sbjct: 7   NRIFVGGLGWNTSERHLEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDAIR 66

Query: 57  ELDGK---------NGWRVELSHNSXXXXXXXXXXXXXXXSDLK-----------CYECG 96
           E+ G+         N  + ++                      +           C++CG
Sbjct: 67  EMHGRELDGRVISVNKAQPKMGSEDSGYGYGGRDRMLGGRDSYRGVDKPVGRSDDCFKCG 126

Query: 97  EPGHFAREC 105
            PGH+AR+C
Sbjct: 127 RPGHWARDC 135


>GSVIVT01016195001 assembled CDS
          Length = 294

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 38/142 (26%)

Query: 2   SRVYVGNLDARVTERELEDEFRRFG-VIRSVWV--------------------ARRPPGY 40
           +R++VG L   VTER+LE+ F RFG +I S ++                      RP G+
Sbjct: 7   NRIFVGGLSWDVTERQLENTFSRFGKIIESQFIFCQICSSFSFELVFIMLERDTGRPRGF 66

Query: 41  AFIDFDDKRDAEDAIHELDGKNGWRVELSHNSXXXXXXX-----------------XXXX 83
            FI + D+R  EDAI E+ G++     +S N                             
Sbjct: 67  GFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKMGEDPDHGYNGGYSSGGRGSYGGG 126

Query: 84  XXXXSDLKCYECGEPGHFAREC 105
                   C++CG PGH+AR+C
Sbjct: 127 DRSAGQDDCFKCGRPGHWARDC 148