Jatropha Genome Database

JcCB0016411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016411.10 - phase: 0 /partial
         (315 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021666001 assembled CDS                                       535   e-152
GSVIVT01020436001 assembled CDS                                       195   2e-50

>GSVIVT01021666001 assembled CDS
          Length = 394

 Score =  535 bits (1377), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/282 (91%), Positives = 270/282 (95%)

Query: 34  KSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 93
           K  + VSAFLEIHDIAGLVRGAH+GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS
Sbjct: 81  KPKSEVSAFLEIHDIAGLVRGAHQGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 140

Query: 94  VDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHEMCQKVKAWLEDGKD 153
           VDPVRDLEVI  ELRLKD+EFIE+RIED+EKSMKRSNDKQLKIE E+C KVKA+LEDGKD
Sbjct: 141 VDPVRDLEVISEELRLKDIEFIEKRIEDVEKSMKRSNDKQLKIELELCLKVKAFLEDGKD 200

Query: 154 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGETII 213
           +RLGDWKAAD+EILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQ+HGGETII
Sbjct: 201 IRLGDWKAADVEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQDHGGETII 260

Query: 214 PFSAAFERNLADMTPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQI 273
           PFS A ERNLADM  DEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQI
Sbjct: 261 PFSCALERNLADMPEDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQI 320

Query: 274 RRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
           RRQ+KAPQAAGTIHSDFERGFICAEVMKF+DLKELGSE AVK
Sbjct: 321 RRQTKAPQAAGTIHSDFERGFICAEVMKFDDLKELGSEGAVK 362


>GSVIVT01020436001 assembled CDS
          Length = 370

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 166/289 (57%), Gaps = 7/289 (2%)

Query: 32  IDKSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD 91
           I KS   V A +E  DIAGLV+GA +G+GLGN FLSHIR VD I  V+R FED DI+HV+
Sbjct: 58  ISKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 117

Query: 92  DSVDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHE--MCQKVKAWLE 149
             VDP  D++VI  EL   DL+ IE+R+E ++K   + +  +LK E E    ++++  L 
Sbjct: 118 GKVDPKSDIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALM 177

Query: 150 DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDY-QRKKNKFLPKIHAWVQE-H 207
           DGK  R       + + +    LLT KP++Y+ N+ E D  +   N ++ ++     E  
Sbjct: 178 DGKPARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQ 237

Query: 208 GGETIIPFSAAFERNLADMTPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPD 266
            G  I+  SA  E  L ++  +E  ++ +   V +S L  +I+  +S + L  +FT+G  
Sbjct: 238 SG--IVTISAQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEK 295

Query: 267 EVKCWQIRRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
           E K W I     APQAAG IHSDFE+GFI AE + ++D    GS +A +
Sbjct: 296 ETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAR 344