Jatropha Genome Database

JcCB0016381.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016381.30 + phase: 0 
         (94 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012825001 assembled CDS                                       177   1e-45
GSVIVT01035882001 assembled CDS                                       166   2e-42
GSVIVT01020928001 assembled CDS                                       128   5e-31
GSVIVT01037186001 assembled CDS                                       102   2e-23

>GSVIVT01012825001 assembled CDS
          Length = 1032

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 88/92 (95%)

Query: 1  MAGNDWINSYLDAILDVDPGIDNAKLSLLLRERGRFSPTRYFVEEVITGFDETDLHRSWL 60
          MAGNDWINSYL+AILDV PG+D+AK SLLLRERGRFSPTRYFVE+VITGFDETDLHRSW+
Sbjct: 1  MAGNDWINSYLEAILDVGPGLDDAKTSLLLRERGRFSPTRYFVEQVITGFDETDLHRSWV 60

Query: 61 RAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          RAAA RS QERNTRLENMCWRIWNLAR+KKQ+
Sbjct: 61 RAAATRSPQERNTRLENMCWRIWNLARQKKQL 92


>GSVIVT01035882001 assembled CDS
          Length = 1034

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 83/92 (90%)

Query: 1  MAGNDWINSYLDAILDVDPGIDNAKLSLLLRERGRFSPTRYFVEEVITGFDETDLHRSWL 60
          MAGNDW+NSYL+AI+D  P + +AK SLLLRERG FSPTRYFVEEVITGFDETDLHRSW 
Sbjct: 1  MAGNDWLNSYLEAIIDAGPNLGDAKSSLLLRERGHFSPTRYFVEEVITGFDETDLHRSWA 60

Query: 61 RAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          RA+A RS QERNTRLENMCWRIWNLARKKKQ+
Sbjct: 61 RASATRSPQERNTRLENMCWRIWNLARKKKQL 92


>GSVIVT01020928001 assembled CDS
          Length = 1046

 Score =  128 bits (321), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 78/94 (82%), Gaps = 2/94 (2%)

Query: 1  MAGNDWINSYLDAIL-DVDPGIDNAKLS-LLLRERGRFSPTRYFVEEVITGFDETDLHRS 58
          MAGN+WIN YL+AIL      I+++K + + LRE G F+PT+YFVEEV+TG DETDLHR+
Sbjct: 1  MAGNEWINGYLEAILVSGASAIEDSKATPIALREGGHFNPTKYFVEEVVTGVDETDLHRT 60

Query: 59 WLRAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          W++  A R+T+ER++RLENMCWRIW+LARKKKQ+
Sbjct: 61 WIKVVATRNTRERSSRLENMCWRIWHLARKKKQL 94


>GSVIVT01037186001 assembled CDS
          Length = 1018

 Score =  102 bits (255), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 14/103 (13%)

Query: 1  MAGNDWINSYLDAILD----------VDPGIDNAKLSLLLRERGRFSPTRYFVEEVITGF 50
          MAGN+WIN YL+AILD          V+ G + +        R RF    YFVEEV+  F
Sbjct: 1  MAGNEWINGYLEAILDAGSSRNGLRVVEDGDEKSNSKNNGSRRRRF----YFVEEVVNSF 56

Query: 51 DETDLHRSWLRAAAMRSTQERNTRLENMCWRIWNLARKKKQVC 93
          DE+DLHR+W++  A R++++R+ RLENMCWRIW+LARKKKQ+ 
Sbjct: 57 DESDLHRTWIKVIATRNSRDRSNRLENMCWRIWHLARKKKQIA 99