Jatropha Genome Database

JcCB0016381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016381.10 - phase: 0 
         (386 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012831001 assembled CDS                                       291   3e-79

>GSVIVT01012831001 assembled CDS
          Length = 412

 Score =  291 bits (745), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 159/343 (46%), Positives = 227/343 (66%), Gaps = 16/343 (4%)

Query: 1   MDQTQVKDDRSLLYMLEALRKASKDLQNNSIFITHNPQT-IMESLLNLRNEADALFSTNP 59
           M++     +  +L +LEALR+AS  LQ N    + N  +  +++LL L  E+++L S++P
Sbjct: 37  MEEASDHPNPQVLTVLEALRQASHHLQTNPTLNSDNSNSSAIKALLELETESNSLLSSDP 96

Query: 60  NLSKLCNLLFTLKTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKECV 119
           +LS L   L +LK L   ++ S+G+SL S L+R+ +   I +V  +IE+E++A ID+E V
Sbjct: 97  HLSALSRHLSSLKDLVHTLQKSRGHSLTSFLTRRASTQSISRVAGSIESEIRAWIDRERV 156

Query: 120 RNLVRIIQETESDSEEDKLRVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTRP 179
            +L R ++E   D E  KL  L  FE R+SQGF  + Q+L+L++K FSLLES++C+    
Sbjct: 157 EDLTRALRELADDDELVKL--LTQFENRVSQGFSHELQDLILKSKVFSLLESVLCNPNCS 214

Query: 180 MKIREQAALCVVGLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLID 239
            KIRE +   V  L+RFN+DVFVG VLMG  V +L++  S  S+ VL SLI+ I++PL+D
Sbjct: 215 KKIREHSGFAVSALIRFNKDVFVGQVLMGRTVLALIAMGSRSSLTVLWSLIKSIKSPLVD 274

Query: 240 EIELEGEIPRIISLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQRS 299
           EIE  GEIP+IIS FSSQDL I++AA+DC +EI Y+GRKE IEAM+++G+IEKL+ELQRS
Sbjct: 275 EIESNGEIPKIISFFSSQDLDIRIAAVDCAFEIGYYGRKEAIEAMLKEGVIEKLLELQRS 334

Query: 300 TCGDDLAERDQFNGNVSNAEVCAE--IVKKRPFASCVARFALQ 340
             G  L E             C E   ++  PFASCVARFA+Q
Sbjct: 335 EMGGILIEMG-----------CREKRFLETHPFASCVARFAVQ 366