Jatropha Genome Database

JcCB0016371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016371.20 - phase: 0 
         (120 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030137001 assembled CDS                                        99   3e-22
GSVIVT01026843001 assembled CDS                                        82   5e-17
GSVIVT01030135001 assembled CDS                                        80   2e-16
GSVIVT01014798001 assembled CDS                                        59   4e-10
GSVIVT01003316001 assembled CDS                                        59   6e-10
GSVIVT01003315001 assembled CDS                                        52   4e-08
GSVIVT01014802001 assembled CDS                                        51   1e-07
GSVIVT01014795001 assembled CDS                                        50   3e-07

>GSVIVT01030137001 assembled CDS
          Length = 213

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 67/89 (75%), Gaps = 14/89 (15%)

Query: 1   MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
           M++K+VIKV+MNG KSRSK+LK+ VGV+GVESAAL   +KNQIEVIGEG+DAV LT+LLR
Sbjct: 35  MKKKMVIKVTMNGEKSRSKSLKVAVGVAGVESAALQGQEKNQIEVIGEGIDAVALTTLLR 94

Query: 61  NKLGKKDCLTCFLSNNKTYAELVSVSPVG 89
            K+G              +AELVSVS VG
Sbjct: 95  KKVG--------------FAELVSVSVVG 109


>GSVIVT01026843001 assembled CDS
          Length = 316

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 68/119 (57%), Gaps = 17/119 (14%)

Query: 1   MQQKIVIKVSMNGHK-SRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLL 59
           M+QK+VIKVS NG K SR+K ++  VG  GVES A G +D +QI VIG+ +D+V LT LL
Sbjct: 197 MKQKVVIKVSFNGEKKSRTKVMQAAVGAPGVESIAFGGEDNDQIVVIGDSLDSVNLTRLL 256

Query: 60  RNKLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXX-VQPVNWSCSYGYGVPQY 117
           R K+               +AEL+SVS V             VQP+ W  +Y  GVPQY
Sbjct: 257 RKKV--------------KFAELLSVSSVDEKKEEKKMTEPGVQPMVWP-TYQAGVPQY 300



 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 16/118 (13%)

Query: 1   MQQKIVIKVSMNGHK-SRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLL 59
           M+QK+VIKVS +G K SR+K ++  VGV GVES A G +D +QI VIGE +D+V LT LL
Sbjct: 43  MKQKVVIKVSFSGEKKSRTKVMQAAVGVPGVESIAFGGEDNDQIVVIGESLDSVNLTCLL 102

Query: 60  RNKLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXXVQPVNWSCSYGYGVPQY 117
           R K+               +AEL+SVS V            VQP+ W      GVPQY
Sbjct: 103 RKKV--------------RFAELLSVSSVEKEEEEKMTEPGVQPMVWPTVQA-GVPQY 145


>GSVIVT01030135001 assembled CDS
          Length = 114

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QK+VIKV+MNG KSRSKA+KI V VSGVES A    + +++EVIG+G+DA  LTSLLR
Sbjct: 1  MKQKVVIKVAMNGQKSRSKAMKIAV-VSGVESVAFKGKEMDEVEVIGDGIDAAVLTSLLR 59

Query: 61 NKLGKKDCLT 70
            +G  + L+
Sbjct: 60 KNVGHAELLS 69


>GSVIVT01014798001 assembled CDS
          Length = 111

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 14/88 (15%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKI++KV MN  K R+KA+KI     GV S A+   +K+++ VIG+GVD+  LT  L 
Sbjct: 1  MKQKIIVKVQMNCDKCRAKAMKIAAVEEGVISVAIEGAEKDRVVVIGDGVDSASLTHCLG 60

Query: 61 NKLGKKDCLTCFLSNNKTYAELVSVSPV 88
           KLG              YA +VSV  V
Sbjct: 61 KKLG--------------YATIVSVEEV 74


>GSVIVT01003316001 assembled CDS
          Length = 126

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 11/81 (13%)

Query: 1  MQQKIVIKVSMNGHK-----------SRSKALKIVVGVSGVESAALGKDDKNQIEVIGEG 49
          M+QK+V+ VS+N  K           S SKAL+I  G SGVESAA   +DK+++EV G+ 
Sbjct: 1  MKQKVVLSVSLNYKKKCPCFIFGKLTSHSKALQIAAGSSGVESAAWKGEDKSKLEVSGDS 60

Query: 50 VDAVKLTSLLRNKLGKKDCLT 70
          +D + LT  L+ K+G    +T
Sbjct: 61 IDLIALTKKLKKKIGYTSIVT 81


>GSVIVT01003315001 assembled CDS
          Length = 2865

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 13/75 (17%)

Query: 1    MQQKIVIKVSMNGHKS-----------RSKALKIVVGVSGVESAALGKDDKNQIEVIGEG 49
            M+QK+V+ VS++  KS            SKA+KIV G  GVES    KDDK+++EV GE 
Sbjct: 2740 MKQKVVLGVSLSYKKSWPCFLFGELTCPSKAMKIVSGFHGVESVTW-KDDKSKLEVTGE- 2797

Query: 50   VDAVKLTSLLRNKLG 64
            +D V LT  LR K+G
Sbjct: 2798 IDPVCLTRKLRKKIG 2812


>GSVIVT01014802001 assembled CDS
          Length = 110

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 11 MNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNKLGKKDCLT 70
          MN  K R+KA+KI     GV S A+   +K+++ VIG+GVD+  LT  LR KLG      
Sbjct: 1  MNCDKCRTKAMKIAAVEEGVISVAIEGAEKDRVVVIGDGVDSASLTHCLRKKLG------ 54

Query: 71 CFLSNNKTYAELVSVSPV 88
                  YA LVSV  V
Sbjct: 55 --------YATLVSVEEV 64


>GSVIVT01014795001 assembled CDS
          Length = 132

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 11 MNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNKLGKKDCLT 70
          MN  K R+KA+KI     GV S A+   +K+++ VIG+GVD+  LT  LR KLG      
Sbjct: 1  MNCDKCRTKAMKIAAVEEGVISVAIEGAEKDRVVVIGDGVDSASLTCCLRKKLG------ 54

Query: 71 CFLSNNKTYAELVSVSPV 88
                  YA LVSV  V
Sbjct: 55 --------YATLVSVEEV 64