Jatropha Genome Database

JcCB0015511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0015511.10 + phase: 1 /partial
         (558 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022064001 assembled CDS                                       625   e-179
GSVIVT01009245001 assembled CDS                                       127   1e-29
GSVIVT01035647001 assembled CDS                                       119   4e-27
GSVIVT01025636001 assembled CDS                                        70   2e-12

>GSVIVT01022064001 assembled CDS
          Length = 475

 Score =  625 bits (1612), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/509 (61%), Positives = 371/509 (72%), Gaps = 38/509 (7%)

Query: 53  MKLSALQQSYMNRRSTSFRGSAPLDSSSDSAIKSPAAIFWLVLHGVCCLISXXXXXXXXX 112
           MKLSALQQSY NRRS SFR +  LDSS D + KSPAAIFWLVLHG+CCLIS         
Sbjct: 1   MKLSALQQSYTNRRSNSFRAAGGLDSSVDGSGKSPAAIFWLVLHGLCCLISLVLGFRFSR 60

Query: 113 XXXXXXXXTSTNLYGTPFRQLTTTADLANPLSVPSNPISNTEPPVINKTXXXXXXXXXXX 172
                   T++N           T+ L      PS  +       I              
Sbjct: 61  LVFFLFFSTASN---------GGTSGL-----YPSRVVVGRHGIRIR------------- 93

Query: 173 XXXXPWPHPNPSEVMRAHQIIERVQREQRIQFGVKSPKTVIAVTPTYVRTFQTLHLTGVM 232
               PWPHPNP EVM+AH+IIERVQREQ++QFG+K+P+TVI VTPTYVRTFQTLHLTG+M
Sbjct: 94  ----PWPHPNPDEVMKAHRIIERVQREQKLQFGIKNPRTVIVVTPTYVRTFQTLHLTGLM 149

Query: 233 HSLMVVPYDVVWIVVEAGGVSNETASIIAKSGVKTVHIGFKQKMPNSWEGRHKLEAKMRL 292
           HSLM VPYD++WIV+EAGG +NETAS++AKSG++T+HIGF ++MPNSWE RH+LEA+MRL
Sbjct: 150 HSLMNVPYDLIWIVIEAGGTTNETASLLAKSGLRTIHIGFDRRMPNSWEDRHRLEAQMRL 209

Query: 293 HALRVVREQKLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSIGILAHSGGADEPSLATV 352
            ALR+VRE+KLDGI+MF DDSNMHSMELFDEIQ VKW GAVS+GILAHSG  DE S    
Sbjct: 210 RALRIVREEKLDGILMFGDDSNMHSMELFDEIQKVKWIGAVSVGILAHSGNTDELSSVAH 269

Query: 353 EKEIEKSQSMPVQGPACNASNKLAGWHTFNSLPYEGKNAIYIDDRATVLPQRLEWAGFVL 412
           +K  E++   PVQGPACN+S KL GWH FNSLPY G  A YIDDRATVLP++LEW+GFVL
Sbjct: 270 KKAEEENLPPPVQGPACNSSEKLVGWHIFNSLPYVGNGATYIDDRATVLPRKLEWSGFVL 329

Query: 413 NSRLLWKETEDKPDWINDLDSVD---EDIESPLPLLKDPSMVEPLGSCGRQVLLWWLRVE 469
           NSRLLWK  ED+P+W+ DLD +D   E+IESPL LLKDPSMVEPLGSCGR+VLLWWLRVE
Sbjct: 330 NSRLLWKAAEDRPEWVKDLDKLDGVREEIESPLSLLKDPSMVEPLGSCGRKVLLWWLRVE 389

Query: 470 ARSDSKFPPGWIIDPPLEITVPSKRTPWPDAPPELPANEKPVISTSVSEQTVK-HTKTXX 528
           AR+DSKFP  WIIDPPLE+TVP+KRTPWPDAPPELP+N K +   S+ E T K H K+  
Sbjct: 390 ARTDSKFPARWIIDPPLEVTVPAKRTPWPDAPPELPSNVKEI---SIQEHTEKRHAKSRA 446

Query: 529 XXXXXXXXXXXXHEAKVVDTQVSVRHSEQ 557
                       HE++  D QVS + SE+
Sbjct: 447 SRSKHSSRSKRKHESRTADPQVSSKVSEE 475


>GSVIVT01009245001 assembled CDS
          Length = 381

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 54/309 (17%)

Query: 197 QREQRIQFGVKSPKTVIAVTPTYVRTFQTLHLTGVMHSLMVVPYDVVWIVVEAGGVSNET 256
           Q + + +F     K +I VTPTY R  Q  +L  +   L +VP  ++W+VVE    S ET
Sbjct: 115 QSKTKERFNFIPKKQIIVVTPTYNRALQAFYLNRLGQVLRLVPPPILWMVVEMNVASMET 174

Query: 257 ASIIAKSGVKTVHIGFKQKMPNSWE-GRHKLEAKMRLHALRVVREQKLDGIVMFADDSNM 315
           A I+ K+GV   HI   +   N  + G H+  A     AL  +   KLDGIV FADD N+
Sbjct: 175 AEILRKTGVMYRHIVCTKNSTNVKDRGVHQRNA-----ALEHIEHHKLDGIVYFADDDNI 229

Query: 316 HSMELFDEIQNVKWFGAVSIGILAHSGGADEPSLATVEKEIEKSQSMPVQGPACNASNKL 375
           +S+ELF  ++ +  FG   + +LA S                K++++ ++GP CN S ++
Sbjct: 230 YSLELFKGLREISRFGTWPVAMLAQS----------------KNKAI-LEGPVCNGS-QV 271

Query: 376 AGWHTFNSLPYEGKNAIYIDDRATVLPQ-RLEWAGFVLNSRLLWKETEDKPDW------- 427
            GWHT              ++++  L +  ++ +GF  NS +LW    D   W       
Sbjct: 272 IGWHT--------------NEKSKRLRRFHVDMSGFAFNSTILW----DPKKWRRPTSAP 313

Query: 428 INDLDSVDEDIESPL---PLLKDPSMVEPLGSCGRQVLLWWLRVEARSDSKFPPGWIIDP 484
           I  LD+V E  +       L++D S +E   +   +++ W L +EAR +  +P GW++  
Sbjct: 314 IQQLDTVKEGFQETTFIEQLVEDESQMEGTPAGCSRIMNWHLHLEAR-NLVYPRGWLLQK 372

Query: 485 PLEITVPSK 493
            L++ +P K
Sbjct: 373 NLDVVLPIK 381


>GSVIVT01035647001 assembled CDS
          Length = 448

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 140/292 (47%), Gaps = 52/292 (17%)

Query: 208 SPKTVIAVTPTYVRTFQTLHLTGVMHSLMVVPYDVVWIVVEAGGVSNETASIIAKSGVKT 267
           S K +I VTPTY R FQ  +L  + H+L  VP  ++WIVVE    S ETA ++ ++GV  
Sbjct: 193 SRKLLIIVTPTYARPFQAYYLNRLAHTLKQVPPPLLWIVVEMMSQSAETADMLMRTGVMY 252

Query: 268 VHIGFKQKMPNSWE-GRHKLEAKMRLHALRVVREQKLDGIVMFADDSNMHSMELFDEIQN 326
            H+   + + +  + G H     +R  AL  +   +LDG V FADD N++S++LF++I+ 
Sbjct: 253 RHLMCNKNLTDIKDRGVH-----LRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQ 307

Query: 327 VKWFGAVSIGILAHSGGADEPSLATVEKEIEKSQSMPVQGPACNASNKLAGWHTFNSLPY 386
           ++ FG                   TV K +E      ++GP CN S ++ GWHT N +  
Sbjct: 308 IRRFGT-----------------WTVAKLMESKSKTLLEGPVCNGS-QVIGWHT-NEMTR 348

Query: 387 EGKNAIYIDDRATVLPQRLEWAGFVLNSRLLWKETEDKPDW-------INDLDSVDEDIE 439
             +                E +GF  NS +LW    D   W       I  LD+V E  +
Sbjct: 349 RFRRF------------HTEMSGFAFNSTILW----DPKRWHRPTLEPIRQLDTVKEGFQ 392

Query: 440 SPL---PLLKDPSMVEPLGSCGRQVLLWWLRVEARSDSKFPPGWIIDPPLEI 488
                  L++D S +E L      +++W L +E+ S S +P  W++   L++
Sbjct: 393 VSTFIERLVEDESQMEGLPEGCSTIMVWHLHLES-SHSFYPREWLMKNNLDV 443


>GSVIVT01025636001 assembled CDS
          Length = 292

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 126/271 (46%), Gaps = 53/271 (19%)

Query: 205 GVKSPKTVIAVTPTYVRTFQTLHLTGVMHSLMVVPYDVVWIVVEAGGVSNETASIIAKSG 264
            +   +T++A TP  V   +      + ++L +VP  ++WIVVEA   S+E + I+ K+G
Sbjct: 48  ALNQSQTLMAETPVEVPARR------LAYTLRLVPPPLLWIVVEAQTDSSEVSEILRKTG 101

Query: 265 VKTVHIGFKQKMPNSWEGRHKLEAKMRLHALRVVREQKLDGIVMFADDSNMHSMELFDEI 324
           +   H+  K+   N  E   +++ +  L AL  +   KL GIV FA  SN++ +  FDEI
Sbjct: 102 IMYRHLVSKE---NFTEPAAEMDHQRNL-ALSHIEHHKLSGIVHFAALSNVYDLRFFDEI 157

Query: 325 QNVKWFGAVSIGILAHSGGADEPSLATVEKEIEKSQSMPVQGPACNASNKLAGWHTFNSL 384
           ++++ FG   +  L+          A   K I       ++GP C++S ++ GWH     
Sbjct: 158 RDIEVFGTWPMASLS----------ANRNKVI-------MEGPVCDSS-QVIGWH----- 194

Query: 385 PYEGKNAIYIDDRATVLPQRLEWAGFVLNSRLLWKETEDKPDWINDLDSVDEDIESPLPL 444
                  +   +  T     L  +GF  NS +LW      P+      SV ++ ++ +  
Sbjct: 195 -------LKKMNNETETRSPLHISGFSFNSSILW-----DPERWGRPSSVQDNSQNSIKF 242

Query: 445 LKDPSMVE-------PLGSCGRQVLLWWLRV 468
           +K+ ++ +       P   C R +LLW L +
Sbjct: 243 VKEVALEDESKLKGIPQEDCSR-ILLWNLHI 272