Jatropha Genome Database

JcCB0014891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014891.10 - phase: 0 /partial
         (273 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009441001 assembled CDS                                       129   2e-30
GSVIVT01022067001 assembled CDS                                        69   2e-12
GSVIVT01033188001 assembled CDS                                        69   3e-12
GSVIVT01029265001 assembled CDS                                        51   5e-07

>GSVIVT01009441001 assembled CDS
          Length = 319

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 130/289 (44%), Gaps = 56/289 (19%)

Query: 1   MAVELMMSYRNENFISKMEESVVQEAAS-GLESVNKLIRLLSQKNQEKDQXXXXXXXXXX 59
           MAVELMM Y N++F +KME++ +QEAAS G++SV KL++LLSQ  Q+K            
Sbjct: 1   MAVELMMGYANDSFAAKMEDNALQEAASAGIQSVEKLVKLLSQCQQQKQTTTSL------ 54

Query: 60  XXMDNMDMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRA----XXXXXXXXXXXXXXX 115
                +D+DC AVAD+AV+KFK+VISLL RTRTGHARFRRA                   
Sbjct: 55  ----EIDIDCTAVADMAVTKFKRVISLLDRTRTGHARFRRAPLVPPQQPPQDTDTPVPVS 110

Query: 116 XXXXXXXXQILESKVYYATXXXXXXXXXXXXXXXYFSSVVIPNDNSNNNGVISERKESST 175
                   Q   SK+Y  T                                  E+KES T
Sbjct: 111 HHQPAEDKQTSVSKIYCPTPVHPI-----------------------------EKKESMT 141

Query: 176 TIXXXXXXXXXXX---XXXXTGDTTDSKQLSSSSAFQI-------AGGKPPI-SSSLKRK 224
           TI                  TGD T+S Q S SS F I       + G+PP+ SSSLKRK
Sbjct: 142 TINFTTSHSVSAPNSFVSSLTGD-TESVQPSLSSGFHISNLSQVSSAGRPPLSSSSLKRK 200

Query: 225 CSSETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAISLKLADIPPDDY 273
           CSS                               PAIS K+ADIPPDD+
Sbjct: 201 CSSMDDAGAKCGSSFGRCHCSKKRKLRVKRVVRVPAISTKMADIPPDDF 249


>GSVIVT01022067001 assembled CDS
          Length = 280

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 35/42 (83%)

Query: 1  MAVELMMSYRNENFISKMEESVVQEAASGLESVNKLIRLLSQ 42
          MAVELMM YRN+ F  KMEE+ VQEAA+GLESV KLIRLLS 
Sbjct: 1  MAVELMMGYRNDGFADKMEENAVQEAAAGLESVEKLIRLLSH 42



 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 61/125 (48%), Gaps = 14/125 (11%)

Query: 161 SNNNGVISERKESSTTIX---XXXXXXXXXXXXXXTGDTTDSKQLSSSSAFQIAG----- 212
           +  NGVI +RK+S+TTI                  TGDT DSKQ SSSSAFQI       
Sbjct: 89  TGRNGVI-DRKDSTTTINFSYSSAISGANSFMSSLTGDT-DSKQPSSSSAFQITNLSQVS 146

Query: 213 --GKPPISSS-LKRKCSS-ETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAISLKLADI 268
             G+PP+SSS +KRKCSS +                              PAIS+K+ADI
Sbjct: 147 SVGRPPLSSSSMKRKCSSSDNPGSGKCGGSSGRCHCLKRRKMKLKRVVRVPAISMKMADI 206

Query: 269 PPDDY 273
           PPDD+
Sbjct: 207 PPDDF 211


>GSVIVT01033188001 assembled CDS
          Length = 267

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 27/103 (26%)

Query: 1   MAVELMMSYRNENFISKMEESV-VQEAAS-GLESVNKLIRLLSQKNQEKDQXXXXXXXXX 58
           MAVEL+         SKM+E + +Q+AAS GL+S+  LIR+LS +  +            
Sbjct: 1   MAVELLG-------FSKMDEQIAIQDAASAGLKSMEHLIRMLSHQTNQNH---------- 43

Query: 59  XXXMDNMD-MDCKAVADVAVSKFKKVISLLGRTRTGHARFRRA 100
                NM+ +DC+ + D  VSKFKKVIS+L   RTGHARFRR 
Sbjct: 44  -----NMNQLDCREITDYTVSKFKKVISIL--NRTGHARFRRG 79


>GSVIVT01029265001 assembled CDS
          Length = 279

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 25/102 (24%)

Query: 1   MAVELMMSYRNENFISKMEESV-VQEAAS-GLESVNKLIRLLSQKNQEKDQXXXXXXXXX 58
           MAV+ +         SKM+E + +QEAAS GL+S+  LI LL+  + +  Q         
Sbjct: 1   MAVDFLG-------FSKMDEQMAIQEAASAGLKSMEHLILLLNHHHPQSQQIN------- 46

Query: 59  XXXMDNMDMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRA 100
                    DC+ + D  VSKFK+VIS+L   RTGHARFRR 
Sbjct: 47  -------HFDCREITDFTVSKFKQVISIL--NRTGHARFRRG 79