Jatropha Genome Database

JcCB0014511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014511.20 - phase: 0 /pseudo/partial
         (186 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014341001 assembled CDS                                       174   2e-44

>GSVIVT01014341001 assembled CDS
          Length = 739

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 93/111 (83%)

Query: 76  QGKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVFXXXXXXXXXX 135
           +GK +LVIGTTSEV FLDS+GI D+FSVTYHVP LK +DAKKVL+QLNVF          
Sbjct: 629 KGKNVLVIGTTSEVSFLDSVGIRDAFSVTYHVPTLKTEDAKKVLQQLNVFSDDDIDSAAE 688

Query: 136 XLNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGRQKIKIAHFYDCLQDVVRY 186
            LNDMPIKKLYMLIEMAAQGEHGG AEAIYSG++KI I+HF+DCLQD++RY
Sbjct: 689 ALNDMPIKKLYMLIEMAAQGEHGGEAEAIYSGKEKIAISHFFDCLQDMIRY 739