Jatropha Genome Database

JcCB0014511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014511.10 - phase: 1 /pseudo/partial
         (305 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005215001 assembled CDS                                       145   3e-35
GSVIVT01016738001 assembled CDS                                       120   5e-28
GSVIVT01032029001 assembled CDS                                       112   2e-25
GSVIVT01010359001 assembled CDS                                       111   4e-25
GSVIVT01025340001 assembled CDS                                        94   7e-20
GSVIVT01025342001 assembled CDS                                        92   2e-19
GSVIVT01025341001 assembled CDS                                        92   4e-19
GSVIVT01025339001 assembled CDS                                        90   2e-18
GSVIVT01017943001 assembled CDS                                        85   4e-17
GSVIVT01003798001 assembled CDS                                        85   5e-17
GSVIVT01000084001 assembled CDS                                        84   1e-16
GSVIVT01000083001 assembled CDS                                        83   1e-16

>GSVIVT01005215001 assembled CDS
          Length = 533

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 155/319 (48%), Gaps = 73/319 (22%)

Query: 4   PSVNRNHPSKQLLTP-VNATTNWL--LAKAHVCSSDAGLHQLVHH--------------- 45
           P  + N P KQ+LTP V+ATT+WL  L KAHVCS+DAG+HQL+HH               
Sbjct: 191 PPTDPNCPLKQVLTPSVDATTSWLWQLGKAHVCSNDAGVHQLIHHWLRTHACIEPFIIAA 250

Query: 46  ----IGMR-------------LEINAQARGFPINAG*IIEFSFAPAK*IMHISASVYRDG 88
                GM              L+INA AR   INAG  IE  F P K  M IS + YRD 
Sbjct: 251 HRQLSGMHPIFKLLKPHMRYTLKINALARESLINAGGNIESFFTPGKYCMEISCAAYRDW 310

Query: 89  -RFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIEILSRIILV*NF 147
            RFD++ LPADL RR    PD T   G+RL IEDYP A+DGLLIWS+IE L +  +  N+
Sbjct: 311 WRFDLEGLPADLIRRGVAVPDTTKVHGLRLLIEDYPYANDGLLIWSSIESLVQTYV--NY 368

Query: 148 KLC-----------------TRRHQLGIGGLNFRLLMILHLFSP---PSYGLYQHNMQQ* 187
                               +R +  G G +  R  ++  L      P Y  +  + Q  
Sbjct: 369 YYSDAEMIESDTELQAWYNESRSYPYG-GFIPARPPLMRQLVPKEHDPVYVDFIEDPQAY 427

Query: 188 ILASIHTKINGNET*S*L*EFPQGNREVKLFGILSTHD-HGEYLGDRKRTFYIFWRT*SH 246
            L+S+ + +             Q  + + +  I+S H    EYLG+RK        T   
Sbjct: 428 FLSSLPSLL-------------QATKFMAVIEIISAHSPDEEYLGERKDLSTWSGDTEII 474

Query: 247 EAFCKFSTELTRIEKQIQK 265
           EAF +FS E+ RIEK+I+K
Sbjct: 475 EAFYRFSVEIRRIEKEIEK 493


>GSVIVT01016738001 assembled CDS
          Length = 927

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 90/169 (53%), Gaps = 35/169 (20%)

Query: 3   PPSVNRNHPSKQLLTPVNATTNWL--LAKAHVCSSDAGLHQLVHH--------------- 45
           PPS       + +  PV+AT++W   LAKAHVCS+DAG+HQLV+H               
Sbjct: 531 PPSAPITRAKRVITPPVDATSDWTWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAA 590

Query: 46  -----------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVYRD- 87
                            +   LEIN  AR   INA  +IE  F P +  M ISAS Y++ 
Sbjct: 591 HRQLSAMHPIFKLLDPHMRYTLEINGMARQTLINADGVIESCFTPGRYCMEISASAYKNF 650

Query: 88  GRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
            RFD++ LPADL RR    PDP    G++L IEDYP A+DGLLIW  IE
Sbjct: 651 WRFDLEGLPADLIRRGMAVPDPAQPHGLKLLIEDYPYANDGLLIWRAIE 699


>GSVIVT01032029001 assembled CDS
          Length = 866

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 93/176 (52%), Gaps = 37/176 (21%)

Query: 1   TRPPSVNRNHPSKQLLTP-VNATTNWL--LAKAHVCSSDAGLHQLV-------------- 43
           TRPP V      KQ+ TP  +AT+ WL  LAK HVC+ D+G HQLV              
Sbjct: 541 TRPP-VGDKPQWKQVFTPGWDATSCWLWRLAKTHVCAHDSGYHQLVVHWLRTHCCTEPYI 599

Query: 44  ------------------HHIGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVY 85
                              H+   +EINA AR   INAG IIE  F+P K  + +S++ Y
Sbjct: 600 IAANRQLSAMHPIYRLLHPHLRYTMEINALARESLINAGGIIESCFSPGKYAIELSSAAY 659

Query: 86  RD-GRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIEILSR 140
               RFDM+ALPADL RR     DPT   G++LTIEDYP A+DGL++W  I+   R
Sbjct: 660 DQLWRFDMEALPADLIRRGMAVEDPTAEHGLKLTIEDYPFANDGLVLWDAIKQWVR 715


>GSVIVT01010359001 assembled CDS
          Length = 920

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 86/152 (56%), Gaps = 35/152 (23%)

Query: 20  NATTNWLL--AKAHVCSSDAGLHQLVHH-------------------------------- 45
           +ATT+W+   AKAHVCS+DAG+HQLV+H                                
Sbjct: 551 DATTHWIWKQAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPINKLLRPH 610

Query: 46  IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVYRD-GRFDMDALPADLNRRDY 104
           +   LEINA AR   IN G IIE  F+P K  M +S++ Y+   +FDM+ALPADL RR  
Sbjct: 611 LRYTLEINALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWQFDMEALPADLIRRGM 670

Query: 105 VKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
              DP+   G++L IEDYP A+DGLLIWS I+
Sbjct: 671 AVEDPSMPCGVKLLIEDYPYAADGLLIWSAIK 702


>GSVIVT01025340001 assembled CDS
          Length = 872

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 85/172 (49%), Gaps = 37/172 (21%)

Query: 1   TRPPSVNRNHPSKQLLTP-VNATTNWL--LAKAHVCSSDAGLHQLVHH------------ 45
           TRPP   +    KQ+ TP + AT  WL   AKAH  + D+G H+LV H            
Sbjct: 484 TRPPMDGKPQ-WKQVFTPSLEATGCWLWRFAKAHFLAHDSGYHELVSHWLRTHCATEPYI 542

Query: 46  --------------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVY 85
                                   ++INA AR   INA  IIE SF+P+K  M +S+  Y
Sbjct: 543 IATNRQLSAMHPIYKLLHPHFRYTMQINALARQALINADGIIETSFSPSKYSMELSSVAY 602

Query: 86  RD-GRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
               RFD +ALPADL  R     DPT   G++L IEDYP A+DGL++W  ++
Sbjct: 603 DQLWRFDKEALPADLINRGIAVEDPTAPHGLKLLIEDYPFANDGLILWDALK 654


>GSVIVT01025342001 assembled CDS
          Length = 817

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 83/172 (48%), Gaps = 37/172 (21%)

Query: 1   TRPPSVNRNHPSKQLLTPVNATTN---WLLAKAHVCSSDAGLHQLVHH------------ 45
           TRPP +      KQ+ TP + +T    W LAK H  + D+G HQLV H            
Sbjct: 424 TRPP-IEGKPQWKQVFTPTSESTGRWLWRLAKVHFLAHDSGYHQLVSHWLRTHCVTEPYI 482

Query: 46  --------------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVY 85
                                   + INA+AR   INA  IIE SF+P K  + +S+  Y
Sbjct: 483 IATNRQLSVMHPIYRLLHPHFRYTMHINARARESLINAEGIIESSFSPGKYSVELSSVAY 542

Query: 86  -RDGRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
            +  RFD +ALPADL  R     DP    G++L IEDYP A+DGL++W  ++
Sbjct: 543 DQQWRFDREALPADLINRGIAVEDPDAPHGLKLLIEDYPFANDGLILWDALK 594


>GSVIVT01025341001 assembled CDS
          Length = 2408

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 37/172 (21%)

Query: 1    TRPPSVNRNHPSKQLLTP-VNATTNWL--LAKAHVCSSDAGLHQLVHH------------ 45
            TRPP   +    KQ+ TP + AT +WL   AK H  + D+G H+LV H            
Sbjct: 2020 TRPPMDGKPQ-WKQVFTPGLEATDHWLWKFAKTHFLAHDSGYHELVSHWLRTHCATEPYV 2078

Query: 46   --------------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVY 85
                                +   ++INA AR   INA  IIE SF+  K  M +S++ Y
Sbjct: 2079 IATNRQLSVMHPIYKLLHPHLRYTMQINALAREVLINADGIIETSFSTRKYSMELSSAAY 2138

Query: 86   -RDGRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
             +  RFD +ALPADL  R     DP+ + G++L IEDYP A+DGL++W  ++
Sbjct: 2139 DQQWRFDREALPADLINRGIAVEDPSASHGLKLLIEDYPFANDGLILWDALK 2190



 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 81/172 (47%), Gaps = 37/172 (21%)

Query: 1   TRPPSVNRNHPSKQLLTPVNATTN---WLLAKAHVCSSDAGLHQLVHH------------ 45
           TRPP +      KQ+ TP + +T    W  AK H  + D+G HQLV H            
Sbjct: 454 TRPP-IEGKPQWKQVFTPTSESTGRWLWRFAKVHFLAHDSGYHQLVSHWLRTHCVTEPYI 512

Query: 46  --------------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVY 85
                                   + INA AR   INA  IIE SF+P K  + +S+  Y
Sbjct: 513 IATNRQLSVMHPIYRLLHPHFRYTMHINALARESLINADGIIETSFSPGKYSVELSSVAY 572

Query: 86  -RDGRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
            +  RFD +ALPADL  R     DP    G++L IEDYP A+DGL++W  ++
Sbjct: 573 DQQWRFDKEALPADLINRGIAVEDPDAPHGLKLLIEDYPFANDGLVLWDALK 624



 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 37/172 (21%)

Query: 1    TRPPSVNRNHPSKQLLTPVNATTN---WLLAKAHVCSSDAGLHQLVHH------------ 45
            TRPP   +   +K + TP +  T    W  AKAH  + D+G H+LV H            
Sbjct: 1193 TRPPMDGKPQWNK-VFTPSSEATGLWLWRFAKAHFLAHDSGYHELVSHWLRTHCATEPYI 1251

Query: 46   --------------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVY 85
                                    ++INA AR   I+A  +IE SF+P+K  M +S+  Y
Sbjct: 1252 IATNRQLSVMHPIYRLLYPHCRYTMKINALARQVLISADGVIESSFSPSKYSMELSSVAY 1311

Query: 86   -RDGRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
             +  RFD +ALPADL  R     DPT   G++L I DYP A+DGL++W  ++
Sbjct: 1312 DQQWRFDREALPADLINRGIAIEDPTAPHGLKLLIADYPFANDGLVLWDALK 1363


>GSVIVT01025339001 assembled CDS
          Length = 901

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 79/171 (46%), Gaps = 37/171 (21%)

Query: 2   RPPSVNRNHPSKQLLTPV-NATTNWL--LAKAHVCSSDAGLHQLVHH------------- 45
           RPP   +    KQ+ TP   AT +WL  LAK H  + DAG HQLV H             
Sbjct: 514 RPPMDGKPQ-WKQVFTPSWEATGSWLWKLAKTHFLAHDAGYHQLVSHWLRTHCVTEPYII 572

Query: 46  -------------------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVYR 86
                                  +EINA AR   INA  IIE +F P K    IS++ Y 
Sbjct: 573 ATNRQLSAMHPIYRLLHPHFRYTMEINALAREALINADGIIESAFTPGKYSTEISSAAYG 632

Query: 87  -DGRFDMDALPADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
              RFD   LPADL  R     DP+   G++L I DYP A+DGLL+W  I+
Sbjct: 633 LQWRFDTQGLPADLISRGIAVEDPSSPHGLKLAIPDYPFANDGLLLWDAIK 683


>GSVIVT01017943001 assembled CDS
          Length = 751

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 35/160 (21%)

Query: 12  SKQLLTPVNATTN---WLLAKAHVCSSDAGLHQLVHH----------------------- 45
           + Q+ TP         W LAKA+   +D+G HQL+ H                       
Sbjct: 496 TSQVYTPAEDGVEGSVWQLAKAYAAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLH 555

Query: 46  ---------IGMRLEINAQARGFPINAG*IIEFSFAPAK*IMHISASVYRDGRFDMDALP 96
                        + INA AR   INAG  +E +  P K  + +SA +Y++  F    LP
Sbjct: 556 PIYKLLHPHFRDTMNINALARHILINAGGFLEMTVFPGKYALEMSAVIYKNWNFTEQGLP 615

Query: 97  ADLNRRDYVKPDPTGTKGIRLTIEDYPCASDGLLIWSTIE 136
           ADL +R     DP    G+RL IEDYP A DGL +WS IE
Sbjct: 616 ADLLKRGVAVEDPNYRHGLRLLIEDYPYAVDGLEVWSAIE 655


>GSVIVT01003798001 assembled CDS
          Length = 619

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 32/144 (22%)

Query: 25  WLLAKAHVCSSDAGLHQLVHH------------IGMR--------------------LEI 52
           WLLAKAHV  +D+  HQL+ H            I  R                    + I
Sbjct: 465 WLLAKAHVAVNDSAYHQLISHWLNTHAVVEPFIIATRRQLSVMHPVHRLLDPHFKDTMHI 524

Query: 53  NAQARGFPINAG*IIEFSFAPAK*IMHISASVYRDGRFDMDALPADLNRRDYVKPDPTGT 112
           NA +R   IN+G I+E      +  M +S+++YRD RFD   LPADL +R     DP   
Sbjct: 525 NALSRSIIINSGGILEKILFTQEISMELSSAIYRDWRFDEQGLPADLIKRGLALKDPDNP 584

Query: 113 KGIRLTIEDYPCASDGLLIWSTIE 136
            G+   +EDYP  +DGL IW+ I+
Sbjct: 585 TGVYPLLEDYPYGADGLEIWTAIK 608


>GSVIVT01000084001 assembled CDS
          Length = 900

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 67/144 (46%), Gaps = 32/144 (22%)

Query: 25  WLLAKAHVCSSDAGLHQLVHH--------------------------------IGMRLEI 52
           W LAKA+   +D+G HQL+ H                                    + I
Sbjct: 541 WQLAKAYAAVNDSGYHQLLSHWLNTHAAIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNI 600

Query: 53  NAQARGFPINAG*IIEFSFAPAK*IMHISASVYRDGRFDMDALPADLNRRDYVKPDPTGT 112
           NA AR   INAG ++E +  P+K  M +S+ VY+D      ALPADL +R     D    
Sbjct: 601 NALARQILINAGGVVESTVFPSKYAMEMSSVVYKDWVLTEQALPADLIKRGMAVEDSEAP 660

Query: 113 KGIRLTIEDYPCASDGLLIWSTIE 136
            G+RL I+DYP A DGL IWS IE
Sbjct: 661 HGLRLLIDDYPYAVDGLEIWSAIE 684


>GSVIVT01000083001 assembled CDS
          Length = 738

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 67/144 (46%), Gaps = 32/144 (22%)

Query: 25  WLLAKAHVCSSDAGLHQLVHH--------------------------------IGMRLEI 52
           W LAKA+   +D+G HQL+ H                                    + I
Sbjct: 500 WQLAKAYAAVNDSGYHQLLSHWLNTHAAIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNI 559

Query: 53  NAQARGFPINAG*IIEFSFAPAK*IMHISASVYRDGRFDMDALPADLNRRDYVKPDPTGT 112
           NA AR   INAG ++E +  P+K  M +S+ VY+D      ALPADL +R     D    
Sbjct: 560 NALARQILINAGGVVESTVFPSKYAMEMSSVVYKDWVLTEQALPADLIKRGMAVEDSEAP 619

Query: 113 KGIRLTIEDYPCASDGLLIWSTIE 136
            G+RL I+DYP A DGL IWS IE
Sbjct: 620 HGLRLLIDDYPYAVDGLEIWSAIE 643