Jatropha Genome Database

JcCB0013651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013651.20 + phase: 0 
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004816001 assembled CDS                                       149   8e-37
GSVIVT01004813001 assembled CDS                                       143   3e-35

>GSVIVT01004816001 assembled CDS
          Length = 175

 Score =  149 bits (375), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 107/145 (73%), Gaps = 8/145 (5%)

Query: 18  DNRLKCACDAGILSDACPYDNANDHDIDSEDSNQPQSSDSESC----ESTRLDDLAASCF 73
           D RLK A DAG LS A P D     D D+ DS  P  S SESC    ES RL DLAAS F
Sbjct: 15  DKRLKYAFDAGFLSGAHPPDTPVTVDSDNRDSTIPLGSTSESCDSADESKRLADLAAS-F 73

Query: 74  RVFSDSLSRMELAEMEMIRARETSRWEAEKRRMELDAELTRMMLRTQLQIASVVAGKGPN 133
           RVFS+SL+RMELAEMEM++ARE  R EAEKRR+E +AE+T+M+L+TQLQIAS+V+ + P+
Sbjct: 74  RVFSESLARMELAEMEMLKAREAFRLEAEKRRLESEAEMTQMLLQTQLQIASLVS-RSPS 132

Query: 134 KKRKRVEQEEDESAISTREGALLLS 158
           +KRKR   EED+ +IS REG LLLS
Sbjct: 133 RKRKR--GEEDDPSISEREGGLLLS 155


>GSVIVT01004813001 assembled CDS
          Length = 182

 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 103/141 (73%), Gaps = 8/141 (5%)

Query: 18  DNRLKCACDAGILSDACPYDNANDHDIDSEDSNQPQSSDSESC----ESTRLDDLAASCF 73
           D RLK A DAG LS A P D     D D+ DS  P  S SESC    ES RL DLAAS F
Sbjct: 34  DKRLKYAFDAGFLSGAHPPDTPVTVDSDNRDSTIPLGSTSESCDSADESKRLADLAAS-F 92

Query: 74  RVFSDSLSRMELAEMEMIRARETSRWEAEKRRMELDAELTRMMLRTQLQIASVVAGKGPN 133
           RVFS+SL+RMELAEMEM++ARE  R EAEKRR+E +AE+T+M+L+TQLQIAS+V+ + P+
Sbjct: 93  RVFSESLARMELAEMEMLKAREAFRLEAEKRRLESEAEMTQMLLQTQLQIASLVS-RSPS 151

Query: 134 KKRKRVEQEEDESAISTREGA 154
           +KRKR   EED+ +IS REG 
Sbjct: 152 RKRKR--GEEDDPSISEREGG 170