Jatropha Genome Database

JcCB0013651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013651.10 - phase: 0 
         (303 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004812001 assembled CDS                                       435   e-122
GSVIVT01004815001 assembled CDS                                       361   e-100
GSVIVT01030489001 assembled CDS                                       360   e-100

>GSVIVT01004812001 assembled CDS
          Length = 299

 Score =  435 bits (1119), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/304 (75%), Positives = 247/304 (81%), Gaps = 6/304 (1%)

Query: 1   MASRDKKPAKPSSSRTGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTKG 60
           MASRDKK +KPSSSR  GIRTLSDLNR + P        PQEYYTGGEKSGMLVQDP+KG
Sbjct: 1   MASRDKKSSKPSSSR--GIRTLSDLNRPTAPDSDSDSDGPQEYYTGGEKSGMLVQDPSKG 58

Query: 61  NDVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHNIVF 120
           NDVDAIFNQARQLGAVEGP+                RLLSGE VP+APQQPE VIHNIVF
Sbjct: 59  NDVDAIFNQARQLGAVEGPM--INPSSSSRSFTGTGRLLSGELVPTAPQQPETVIHNIVF 116

Query: 121 WTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCPEPE 180
           W+NGFTVNDGPLRRLDDPENASFLESIRKSECPKELEP DRRSSVHVNLIRRDE CPE E
Sbjct: 117 WSNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPADRRSSVHVNLIRRDENCPESE 176

Query: 181 KQRHVPFQGVGRTLGSSXXX-XXXXXXXXXXLNTAPTPSMGLVVNETLPSTSIQLRLADG 239
           K R VPFQGVGRTLGSS              LNTAP+P+MGL+V+E LPSTSIQLRL+DG
Sbjct: 177 KTR-VPFQGVGRTLGSSSAAPEPEPTVAPTPLNTAPSPNMGLIVDEALPSTSIQLRLSDG 235

Query: 240 TRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIEEAGLGNSVV 299
           TRMIAHFN++HT+ DIRAFI ASRPGG+ NYQLQ+MGFPPK L+DP QTIE+AGL NSVV
Sbjct: 236 TRMIAHFNYHHTITDIRAFIEASRPGGSTNYQLQMMGFPPKQLNDPMQTIEQAGLANSVV 295

Query: 300 IQKF 303
           IQK+
Sbjct: 296 IQKY 299


>GSVIVT01004815001 assembled CDS
          Length = 428

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/259 (74%), Positives = 207/259 (79%), Gaps = 6/259 (2%)

Query: 1   MASRDKKPAKPSSSRTGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTKG 60
           MASRDKK +KPSSSR  GIRTLSDLNR + P        PQEYYTGGEKSGMLVQDP+KG
Sbjct: 1   MASRDKKSSKPSSSR--GIRTLSDLNRPTAPDSDSDSDGPQEYYTGGEKSGMLVQDPSKG 58

Query: 61  NDVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHNIVF 120
           NDVDAIFNQARQLGAVEGP+                RLLSGE VP+APQQPE VIHNIVF
Sbjct: 59  NDVDAIFNQARQLGAVEGPM--INPSSSSRSFTGTGRLLSGELVPTAPQQPETVIHNIVF 116

Query: 121 WTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCPEPE 180
           W+NGFTVNDGPLRRLDDPENASFLESIRKSECPKELEP DRRSSVHVNLIRRDE CPE E
Sbjct: 117 WSNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPADRRSSVHVNLIRRDENCPESE 176

Query: 181 KQRHVPFQGVGRTLGSSXXX-XXXXXXXXXXLNTAPTPSMGLVVNETLPSTSIQLRLADG 239
           K R VPFQGVGRTLGSS              LNTAP+P+MGL+V+E LPSTSIQLRL+DG
Sbjct: 177 KTR-VPFQGVGRTLGSSSAAPEPEPTVAPTPLNTAPSPNMGLIVDEALPSTSIQLRLSDG 235

Query: 240 TRMIAHFNFNHTVNDIRAF 258
           TRMIAHFN++HT+ DIRAF
Sbjct: 236 TRMIAHFNYHHTITDIRAF 254


>GSVIVT01030489001 assembled CDS
          Length = 366

 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/289 (64%), Positives = 215/289 (74%), Gaps = 4/289 (1%)

Query: 17  GGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTKGNDVDAIFNQARQLGAV 76
           GGIRTLSDLNR +           QEYYTGGEKSGMLVQDP+  NDVDAIFNQA Q GAV
Sbjct: 80  GGIRTLSDLNR-TAGDGSDSDSDGQEYYTGGEKSGMLVQDPSSANDVDAIFNQAGQAGAV 138

Query: 77  EGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHNIVFWTNGFTVNDGPLRRLD 136
           + P+D               RLLSGETV S PQ P ++ HNI+FW+NGFTV+DGPLRRLD
Sbjct: 139 QRPIDHLPPSSSSRSFTGMGRLLSGETVSSTPQPPASITHNIIFWSNGFTVDDGPLRRLD 198

Query: 137 DPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCPEPEKQRHVPFQGVGRTLG- 195
           DPENASFLESI+KSE P+E EP DRR++V+VNL+R++E+  EPEK  H PFQGVGRTLG 
Sbjct: 199 DPENASFLESIKKSEWPEEFEPADRRTAVNVNLVRKNEKFIEPEKP-HPPFQGVGRTLGC 257

Query: 196 -SSXXXXXXXXXXXXXLNTAPTPSMGLVVNETLPSTSIQLRLADGTRMIAHFNFNHTVND 254
            SS              NTAP PSMGLVV+ETLP TSIQLRLADGTRMI+ FN++HTV D
Sbjct: 258 SSSNPVGPDPTVPATPFNTAPAPSMGLVVDETLPLTSIQLRLADGTRMISRFNYHHTVRD 317

Query: 255 IRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIEEAGLGNSVVIQKF 303
           IR FI+ASR  G ++YQLQ +GFPPK L+D  QTIE+AGL +SVVIQKF
Sbjct: 318 IRNFIDASRSSGPRDYQLQTVGFPPKQLTDLDQTIEQAGLASSVVIQKF 366