Jatropha Genome Database

JcCB0013521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013521.10 - phase: 0 
         (165 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029271001 assembled CDS                                       226   5e-60

>GSVIVT01029271001 assembled CDS
          Length = 170

 Score =  226 bits (575), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/166 (70%), Positives = 136/166 (81%), Gaps = 3/166 (1%)

Query: 3   SQTLT-DPTS--SSMDPIFHIVKIVPYXXXXXXXXXXXXXXXXXXXXMTVFALVLLTYFM 59
           S+TL  D T+  +SMDPIFHI+K++P+                    MTV+AL+LLTYFM
Sbjct: 5   SETLAADSTTVATSMDPIFHILKVLPFSFLHPPRLRLKLPSLSLPSPMTVYALLLLTYFM 64

Query: 60  VVSGIVYDVIVEPPGIGSTQDPATGSIRPVVFLPGRVNGQYIIEGLSSGFMFVLGGTGIV 119
           VVSGIVYDVIVEPPGIGS+QD  TG++RPVVFLPGRVNGQYIIEGLSSGFMFVLGG GIV
Sbjct: 65  VVSGIVYDVIVEPPGIGSSQDRHTGAVRPVVFLPGRVNGQYIIEGLSSGFMFVLGGIGIV 124

Query: 120 LMDLALDKNRAKSVKVSYATAGISSLIIAYVMSMLFIRIKIPGYLR 165
           LMDLALD+NRAKSVKVS+A+AG++S++IAYVMSMLFIRIKIP YL 
Sbjct: 125 LMDLALDRNRAKSVKVSFASAGVASVVIAYVMSMLFIRIKIPAYLH 170