Jatropha Genome Database

JcCB0013151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.20 - phase: 0 
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018845001 assembled CDS                                       172   8e-44
GSVIVT01009812001 assembled CDS                                       166   7e-42
GSVIVT01024206001 assembled CDS                                       158   2e-39
GSVIVT01037267001 assembled CDS                                       126   7e-30
GSVIVT01013486001 assembled CDS                                        98   3e-21

>GSVIVT01018845001 assembled CDS
          Length = 317

 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 104/136 (76%), Gaps = 6/136 (4%)

Query: 11  SRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQNPHQ 70
           S CQDCGNQAKK+C+HMRCRTCCKS+GF+C TH+KSTW+PA +RR R  ++ ++ +NP +
Sbjct: 88  SACQDCGNQAKKDCIHMRCRTCCKSRGFQCPTHIKSTWVPAAKRRERQQHLTLRGENPKR 147

Query: 71  QPRTNSNPKRLRLSPL----TGLEVGNFPAEVNSIATFRCFRMSSIDEEGDYQLAYQTSV 126
           Q R N +   L  + L    +GLE+ NFP+EVNS A FRC R+SSIDE  D Q AYQT+V
Sbjct: 148 Q-RENPSSSALACTRLPTHTSGLEIANFPSEVNSPAVFRCVRVSSIDETDD-QYAYQTAV 205

Query: 127 GIGGHVFQGILYDQGP 142
            IGGHVF+GILYD GP
Sbjct: 206 NIGGHVFKGILYDHGP 221


>GSVIVT01009812001 assembled CDS
          Length = 289

 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/221 (45%), Positives = 116/221 (52%), Gaps = 31/221 (14%)

Query: 1   MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSN 60
           +MRQGG  GG  CQDCGNQAKK+C+HMRCRTCCKS+GF C THVKSTW+PA +RR     
Sbjct: 98  VMRQGGGGGGMNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRR----- 152

Query: 61  IAVQQQNPHQQPRTNSNPKRLRLSPLT-GLEVGNFPAEVNSIATFRCFRMSSIDEEGDYQ 119
                     Q R   NP    L+  T GLEVG+FP+EVNS A FRC R+S++D E D Q
Sbjct: 153 --------ENQKRQRENPVAPALATTTSGLEVGHFPSEVNSPAYFRCVRVSAMD-EADEQ 203

Query: 120 LAYQTSVGIGGHVFQGILYDQGPHQESFSTQLLQDTXXXXXXXXXXXXXXXXXXXXXXXX 179
           LAYQT+V IGGHVF+GILYD GP                                     
Sbjct: 204 LAYQTAVNIGGHVFKGILYDHGPESRYGGESSSGGGSGSQQHNLITAPPGVTTTSNQATT 263

Query: 180 XXXXXXXXXXXXXXVGAEHSSSYPFPLNAFTSGTQLFLHPK 220
                               S YP PLN F +GTQ F  P+
Sbjct: 264 LL----------------DPSLYPAPLNVFMAGTQFFPPPR 288


>GSVIVT01024206001 assembled CDS
          Length = 227

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 108/166 (65%), Gaps = 15/166 (9%)

Query: 1   MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLR--- 57
           MMRQGG    S CQDCGNQAKK+C+HMRCRTCCK +GF+CQTHVKSTW+P YRRR R   
Sbjct: 24  MMRQGGSRSLS-CQDCGNQAKKDCLHMRCRTCCKGRGFQCQTHVKSTWVPVYRRRQRQQH 82

Query: 58  -PSNIAVQQQNPHQQPRTNSNPKRLRLSPLTGL-EVGNFPAEVNSIATFRCFRMSSIDEE 115
            P+    QQ      PR  S+     ++P T   +  NFPAEV+S A FR  R++SID  
Sbjct: 83  LPATTVPQQLLQGHNPRPTSS--GTTVAPTTDPHKARNFPAEVSSPAMFRRVRVNSIDNA 140

Query: 116 GDYQLAYQTSVGIGGHVFQGILYDQGPH------QESFSTQLLQDT 155
            D Q AYQT+V IGGH+F+GILYD+GP        ES   QL Q T
Sbjct: 141 VD-QYAYQTAVIIGGHIFKGILYDEGPEIQFIGGGESLFPQLQQPT 185


>GSVIVT01037267001 assembled CDS
          Length = 277

 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 89/157 (56%), Gaps = 25/157 (15%)

Query: 9   GGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQNP 68
           GG+ CQDCGNQAKK+C H RCRTCCKS+GF+C THVKSTW+PA RRR R   ++V     
Sbjct: 97  GGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMVSVTPGAG 156

Query: 69  HQQPRTNSNPKRL--------------RLSPLTGLEVGN----------FPAEVNSIATF 104
                + +   RL                +P    +  +           P +V + A F
Sbjct: 157 SSGSTSGAKKPRLITSQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKEALPGQVRAPAVF 216

Query: 105 RCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
           +C R++++D +G+ + AYQ  V IGGHVF+G LYDQG
Sbjct: 217 KCVRVTAVD-DGEDEYAYQAVVKIGGHVFKGFLYDQG 252


>GSVIVT01013486001 assembled CDS
          Length = 322

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 33/162 (20%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIP---------------------- 50
           C DCGN+AK++C +  CRTCCK +G++C THVKSTW+P                      
Sbjct: 114 CVDCGNKAKRDCSYRMCRTCCKGRGYDCATHVKSTWVPAARRRERQAAVAAFVAGGGSSG 173

Query: 51  -----AYRRRLRPSNIAVQQQNPHQQPRTNSNPKRLRLSPL--TGLEVGNFPAEVNSIAT 103
                A R RL  +  A         P T   P+    +          + P +V + A 
Sbjct: 174 SSSAVAKRPRLGSTQAATASHTSTSLPNT---PRSFDATSTHQDASFKESLPRQVRAPAV 230

Query: 104 FRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQE 145
           FRC R+++I E+G  +  YQ  V I GHVF+G LYDQG +++
Sbjct: 231 FRCIRVTAI-EDGQNEYVYQAMVKINGHVFKGFLYDQGLNEK 271