Jatropha Genome Database

JcCB0013151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.10 - phase: 1 /partial
         (288 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024207001 assembled CDS                                       322   2e-88
GSVIVT01003253001 assembled CDS                                        58   5e-09
GSVIVT01001119001 assembled CDS                                        55   5e-08
GSVIVT01021426001 assembled CDS                                        50   1e-06

>GSVIVT01024207001 assembled CDS
          Length = 834

 Score =  322 bits (824), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/291 (56%), Positives = 187/291 (64%), Gaps = 22/291 (7%)

Query: 12  IGNTFSSPAADXXXXXXXXXXXXXXXXXXXXXXXQSRFATSESTPTTHXXX--------- 62
           IGNTFSSP                           SRFA SE+TPT              
Sbjct: 25  IGNTFSSPG--DGTRRRRGRRPSASPAFATPPHPHSRFAASETTPTPSEATPTPSSGRRR 82

Query: 63  -----XXXXXXXXXXXXXXXXXXXXXXXXDYMDEATPTFVWGTNISVEDVKERFQMFLKH 117
                                        D MDEA P FVWGTNISV+DV      FL+H
Sbjct: 83  RGSRRASVSTPIATPSSTDEAPPSSEGEGDDMDEAPPMFVWGTNISVQDVNAAILRFLRH 142

Query: 118 YRDNSQSLSNEIFEEGKYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPLEVLA 177
           +R++          EGKY++AI +VLE+EGE LDVDAHDVFDYDSDLY KMVRYPLEVLA
Sbjct: 143 FREHPS------HTEGKYMRAIHRVLEIEGESLDVDAHDVFDYDSDLYTKMVRYPLEVLA 196

Query: 178 IFDIVLMDFVGLMDPLFEKHVQVRIYNLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIP 237
           IFDIVLMD V  ++PLFEKH+Q RI+NLKTST+MRNLNPSDIEKMVSLKGMIIRCSSIIP
Sbjct: 197 IFDIVLMDMVSRINPLFEKHIQARIFNLKTSTSMRNLNPSDIEKMVSLKGMIIRCSSIIP 256

Query: 238 EIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQECLAKNSMTLVHNRCR 288
           EIREA+FRCLVC + + P +V+RGRINEPT C + ECLAKNSMTL+HNRCR
Sbjct: 257 EIREAVFRCLVCRHYSDPIVVDRGRINEPTTCGRPECLAKNSMTLIHNRCR 307


>GSVIVT01003253001 assembled CDS
          Length = 822

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 17/193 (8%)

Query: 102 ISVEDVKERFQMFLKHYRDNSQSLSNEIFEEGKYVKAIRKVLEVEGEGLDVDAHDVFDYD 161
           + VE++   F  FLK +R +    S E+F    Y   I  +   E   + +D   V  Y+
Sbjct: 15  VRVENI---FLEFLKSFRLDP---SGELF----YESEIEAMKSNESTTMFIDFSHVMRYN 64

Query: 162 SDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPLF------EKHVQVRIYNLKTSTTMRNLN 215
             L   +    L +          +V    P F       K + V  +N+     +R+L 
Sbjct: 65  DLLQKAISDEYLRLEPYLKNACKRYVMEQKPTFIADDNPNKDINVAFFNIPLLKRLRDLT 124

Query: 216 PSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQECL 275
            +++ K+VS+ G++ R S + PE+ +  F+CL CG+V    + ++ +  EP +C+   C 
Sbjct: 125 TAEVGKLVSITGVVTRTSEVRPELLQGTFKCLECGSVIKN-VEQQFKYTEPVICMNATCA 183

Query: 276 AKNSMTLVHNRCR 288
            +    LV    +
Sbjct: 184 NRTKWALVRQESK 196


>GSVIVT01001119001 assembled CDS
          Length = 954

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 107 VKERFQMFLKHYRDNSQSLSNEIFEEG--KYVKAIRKVLEVEGEGLDVDAHDVFDYDSDL 164
           + ++F+ FL  Y        N   E G  +YV+ I +++      L++D         ++
Sbjct: 236 IAKKFKEFLLTY-------VNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYIHPNI 288

Query: 165 YAKMVRYPLEVLAIFDIVLMDFVGLMDPLFE---KHVQVRIYNLKTSTTMRNLNPSDIEK 221
              +   P  VL + + V  + V  + P ++   + + VRI NL     +RN+    +  
Sbjct: 289 AIWLADAPQSVLEVMEDVAKNVVFDLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNT 348

Query: 222 MVSLKGMIIRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQECLAKNSMT 281
           M+ + G++ R S + P++++  + C  CG + GPF   +   +E  V    EC +K   T
Sbjct: 349 MIRIGGVVTRRSGVFPQLQQVKYDCNKCGMILGPFF--QNSYSEVKVGSCPECQSKGPFT 406

Query: 282 L 282
           +
Sbjct: 407 V 407


>GSVIVT01021426001 assembled CDS
          Length = 776

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 117 HYRDNSQSLSNEIFEEGKYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPLEVL 176
           H RD    L  +I  +G Y+  I+ ++  +   L ++  D+ DY +DL  ++++ P E +
Sbjct: 11  HKRDFMDFLDQDI-GKGIYIDEIKAMINHKRHRLILNISDLHDYRTDLAHRILKNPGEYM 69

Query: 177 AIFDIVLMDFVGLMDPLFEKHVQVRIYNLKTSTTMRNLNPSD-----IEKMVSLKGMIIR 231
             F     D    +DP + K  +  +   +     R + P D     I  MV ++G++ +
Sbjct: 70  QPFSDAATDVSRNLDPKYLKEGEQILVGFEGPFVSRRVTPRDLLSSFIGSMVCVEGIVTK 129

Query: 232 CSSIIPEIREAIFRCLVCGN 251
           CS + P++ +++  C   GN
Sbjct: 130 CSLVRPKVVKSVHFCPSSGN 149