Jatropha Genome Database

JcCB0012961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.30 - phase: 0 /pseudo/partial
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030995001 assembled CDS                                        48   1e-06

>GSVIVT01030995001 assembled CDS
          Length = 584

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 32/51 (62%), Gaps = 7/51 (13%)

Query: 27  FINEVASISRTSHVNIVTLSGFC----SRVLKEHLSPSSGLMDLLIITYNK 73
           FINEVASISRTSHVNIVT  GFC     R L     P +G +D  I  YN+
Sbjct: 367 FINEVASISRTSHVNIVTFMGFCFERSRRALIYEFMP-NGSLDKFI--YNR 414