Jatropha Genome Database

JcCB0012961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.20 - phase: 0 /partial
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023109001 assembled CDS                                       129   3e-31
GSVIVT01023110001 assembled CDS                                       117   9e-28
GSVIVT01027608001 assembled CDS                                        92   6e-20
GSVIVT01023120001 assembled CDS                                        82   7e-17

>GSVIVT01023109001 assembled CDS
          Length = 369

 Score =  129 bits (323), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 70/75 (93%), Gaps = 1/75 (1%)

Query: 1   SALEKLLKDHAGKYATGDEVFLADLFLAPQIHAA-ERFKVDMTQFPLLLRLYEAYNELPA 59
           +ALEKLLKDHAGKYATGDEVFLADLFLAPQIHAA +RFK+DMT+FPLLLRL +AYNELPA
Sbjct: 295 AALEKLLKDHAGKYATGDEVFLADLFLAPQIHAALKRFKMDMTEFPLLLRLNDAYNELPA 354

Query: 60  FQKAMPQKQPDAPPS 74
           FQ AMP+KQPD  PS
Sbjct: 355 FQDAMPEKQPDYVPS 369


>GSVIVT01023110001 assembled CDS
          Length = 227

 Score =  117 bits (294), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 1   SALEKLLKDHAGKYATGDEVFLADLFLAPQIH-AAERFKVDMTQFPLLLRLYEAYNELPA 59
           +ALEKLLKDHA KYA+GDEVFLADLFLAPQIH A  RF VDMTQF LLLRL +AYNELPA
Sbjct: 153 AALEKLLKDHAAKYASGDEVFLADLFLAPQIHDALTRFNVDMTQFSLLLRLNDAYNELPA 212

Query: 60  FQKAMPQKQPD 70
           FQ AMP+KQPD
Sbjct: 213 FQDAMPEKQPD 223


>GSVIVT01027608001 assembled CDS
          Length = 216

 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 2   ALEKLLKDHAGKYATGDEVFLADLFLAPQIHAAE-RFKVDMTQFPLLLRLYEAYNELPAF 60
           ALEKLLKD+AG YATG+EV++AD+FLAPQ   AE RF +DM++FP L  +Y++  +LP F
Sbjct: 144 ALEKLLKDYAGTYATGEEVYMADVFLAPQTAVAEMRFNIDMSKFPTLNGIYKSCKDLPEF 203

Query: 61  QKAMPQKQPDA 71
           Q ++P++QPDA
Sbjct: 204 QASVPERQPDA 214


>GSVIVT01023120001 assembled CDS
          Length = 92

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 46/53 (86%), Gaps = 1/53 (1%)

Query: 23 ADLFLAPQIHAA-ERFKVDMTQFPLLLRLYEAYNELPAFQKAMPQKQPDAPPS 74
          ADLFLAPQIHAA + FKVDMT+FPLLLRL +AYNELPAFQ AM +KQPD  PS
Sbjct: 40 ADLFLAPQIHAALKWFKVDMTEFPLLLRLNDAYNELPAFQDAMKEKQPDYVPS 92