Jatropha Genome Database

JcCB0012961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.10 - phase: 2 /pseudo/partial
         (359 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035583001 assembled CDS                                       187   4e-48

>GSVIVT01035583001 assembled CDS
          Length = 404

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 101/114 (88%)

Query: 197 ASEGGASAFKLDYKGQPACLAQSHQLHKQMAICGDKERVFEVGSVFKAEESYTPRHLCEF 256
           +SEGG++ F+LDYKGQPACLAQS QLHKQMAICGD  RVFE+G VF+AE+S+T RHLCEF
Sbjct: 130 SSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEF 189

Query: 257 VGHDVEMEIKKHYSEVMDVVDRLFITIFDYLNEHCKNELEAVQRQHPFEPLKVI 310
            G DVEMEIK+HY EVMD+VDRLF+ +FD LNE+CK ELEA++RQ+PFEPLK +
Sbjct: 190 TGLDVEMEIKEHYFEVMDIVDRLFVAMFDSLNENCKKELEAIERQYPFEPLKYL 243