Jatropha Genome Database

JcCB0012281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012281.10 - phase: 0 
         (533 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019918001 assembled CDS                                       536   e-152
GSVIVT01020580001 assembled CDS                                       129   5e-30

>GSVIVT01019918001 assembled CDS
          Length = 518

 Score =  536 bits (1380), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/509 (55%), Positives = 348/509 (68%), Gaps = 9/509 (1%)

Query: 17  FEAREIDIDYEFDAAMFFDFTREESAADARQAERWFETAQSYPPSPFVAKFVLREDSLLE 76
           F A EID+DYEFDA  +FDF+R+ES A+ARQAE WFE+A+SYPPSPFVAK VLRED LL 
Sbjct: 13  FVAVEIDLDYEFDAVRYFDFSRDESPAEARQAELWFESAKSYPPSPFVAKLVLREDILLG 72

Query: 77  DIRTSPKSNDAENTATLISDDCSDDLVADLPAMEANKESKGTYRGIFTNLQSSNLQKFSN 136
           ++ TSPKS D E  A +   D +  L  ++   +AN    G   G  TNLQS  LQ   +
Sbjct: 73  NVNTSPKSKDME-IAVVPDSDSAVALGQEIFTTDANNRDCG---GTITNLQSGYLQNVHS 128

Query: 137 EPLELKTGLTYYNHSSTDKARAKVKSTVKPNLPRCSTLMKPTASMLAKQNRLLHVNGSRL 196
           +  E  +GL +YNH   D  +AK KSTVK  LPR STLMKPTAS LAKQNR   V   R 
Sbjct: 129 QAQESISGLIFYNHMLNDNPKAKTKSTVKSVLPRSSTLMKPTASQLAKQNRPHQVGSFRF 188

Query: 197 QMLLVQKEKSLC--NSMVESQAAKRQKLEGGHSCRVGDAKQQADFIHKAPKKDGAVDKSC 254
           Q LL Q  +  C  +S VESQAAKRQKLEGGH  +V D K+Q + +HK PKKD  +D + 
Sbjct: 189 QTLLAQNNERGCINSSGVESQAAKRQKLEGGHLFKVADTKEQTNLVHKVPKKDATIDGNS 248

Query: 255 AHSKLRLTIPREPDLETAHRAQRIRQKNTTRFECVTVAVQRFKARPLNRKILEAXXXXXX 314
             ++L+LTIPREP+LETA+R QR+R K+ T  + V + V RFKARPLNRKILEA      
Sbjct: 249 MQARLKLTIPREPNLETAYRTQRMRSKHHTEVDQVALNVHRFKARPLNRKILEAPSLPLP 308

Query: 315 XXXXXXXXEFQEFHLKTSERAMQHASAVSSTSFQCNDSEQGLDKPTTISVAEMGNRESRR 374
                   EFQEFHLKTSERA QH +  SS+S  CND ++GL KP+T SV E GN++ RR
Sbjct: 309 KKSTPRLPEFQEFHLKTSERARQHTTG-SSSSLHCNDPDKGLQKPSTNSVPENGNKDLRR 367

Query: 375 PSTMDAQKQDGCSTTHIFKARPLNKKIFTSKGDIGIFRNSKRETTVPLEFNFRTEKRIQH 434
           P+T DA KQD C T   FKARPLNKKIF+SKGDIG+FRNSKRETTVPLEFNF+TEKR QH
Sbjct: 368 PNTTDAPKQDACETVRTFKARPLNKKIFSSKGDIGVFRNSKRETTVPLEFNFQTEKRAQH 427

Query: 435 DPPTELFSKLSLKAELQTNNGSRLQLPRPSFLSINGSKENRLNHLQTEHKTTHLMKEKPS 494
           +PP ELF+KLSL +ELQ  N S+ ++P+P+ +S  GSKENRL   Q E++  +L+K+K  
Sbjct: 428 NPPIELFNKLSLTSELQQKNDSQFKVPQPTCVSTKGSKENRLGFSQPENEIAYLVKDKLP 487

Query: 495 IFGGKQTQCSEVA--NQLSMRYAIGNQVG 521
              G Q QC      N+++ +  I   +G
Sbjct: 488 QSRGVQIQCGSNGGINEINTKSGISRSLG 516


>GSVIVT01020580001 assembled CDS
          Length = 821

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/223 (42%), Positives = 126/223 (56%), Gaps = 17/223 (7%)

Query: 258 KLRLTIPREPDLETAHRAQRIRQKNTTRFECVTVA-VQRFKARPLNRKILEAXXXXXXXX 316
           KL LT P+EP+LET +R + +R K+T   E   +A + +FKARPLN+KILEA        
Sbjct: 377 KLTLTRPKEPELETTNRVRSVRVKSTAELEEEMMAKIPKFKARPLNKKILEAATLPAVPR 436

Query: 317 XXXXXXEFQEFHLKTSERAMQHA--SAVSSTSFQCNDSEQG----LDKP-TTISVAEMGN 369
                  FQEFHL+T  RA Q+A  S V+ST      + Q     L +P T +    +  
Sbjct: 437 SVPQLPVFQEFHLETMTRANQNAESSTVASTESSSLQNHQWNPHHLTEPKTPLLQTSLRA 496

Query: 370 RESRRPSTMDAQKQDGCSTTHIFKARPLNKKIFTSKGDIGIFRNSKRETTVPLEFNFRTE 429
           R  R  S+++ + Q+       FKARPLNKKIF SKG +GIF N+KR+ T P EF+F T+
Sbjct: 497 RPPRVKSSVELE-QEALEKVLPFKARPLNKKIFESKGGLGIFCNTKRQVTKPQEFHFATD 555

Query: 430 KRIQHDPP----TELFSKLSLKAELQTNNG--SRLQLPRPSFL 466
           +RI   PP    T+LF KLSL +E   +N    R+  P P  L
Sbjct: 556 ERI--PPPQASVTDLFDKLSLNSEPHRDNHPIPRITKPNPFHL 596



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 30/46 (65%)

Query: 22 IDIDYEFDAAMFFDFTREESAADARQAERWFETAQSYPPSPFVAKF 67
          ID  YEF A  FFDF   ES A+ R AE WF+TA S+ PSPF+ + 
Sbjct: 9  IDQTYEFSAPKFFDFINGESEAETRNAELWFDTAISHAPSPFMPRI 54