Jatropha Genome Database

JcCB0012061.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012061.30 - phase: 2 /partial
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009931001 assembled CDS                                        81   1e-16

>GSVIVT01009931001 assembled CDS
          Length = 818

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 2   VDNDPDEATDNDMKGIEDAYVD-KKKGEYAKFWNELGESIKLNIMEDATNRNILAKFLKF 60
            D DPDE+ D D K +E +  D +KKG+YAKFWNE G+SIKL I+EDA+NRN LAK L+F
Sbjct: 482 ADEDPDESNDKDKKDVEKSSDDDEKKGQYAKFWNEFGKSIKLGIIEDASNRNRLAKLLRF 541

Query: 61  ERIKS 65
           E  KS
Sbjct: 542 ESTKS 546