Jatropha Genome Database

JcCB0011781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011781.10 - phase: 0 
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009009001 assembled CDS                                       515   e-146
GSVIVT01003078001 assembled CDS                                       461   e-130
GSVIVT01000816001 assembled CDS                                       150   7e-37
GSVIVT01001983001 assembled CDS                                        98   4e-21
GSVIVT01000700001 assembled CDS                                        74   7e-14

>GSVIVT01009009001 assembled CDS
          Length = 386

 Score =  515 bits (1326), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 239/259 (92%), Positives = 251/259 (96%)

Query: 3   IDKPLQRHGGRLEHNETYCGSCYGAEASDEDCCNNCEEVREAYRKKGWALSNPDLIDQCK 62
           I+KPLQ+HGGRLEHNETYCGSCYGAEASD+DCCNNCEEVREAYRKKGWA+SNPDLIDQCK
Sbjct: 128 IEKPLQKHGGRLEHNETYCGSCYGAEASDDDCCNNCEEVREAYRKKGWAMSNPDLIDQCK 187

Query: 63  REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNIS 122
           REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSN+HVHDLLAFQKDSFNIS
Sbjct: 188 REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNIHVHDLLAFQKDSFNIS 247

Query: 123 HKINRLTFGEYFPGVVNPLDGVHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSVT 182
           HKINRL FG+YFPGVVNPLDGV W Q TPSGMYQYF+KVVPTVYT VSGHTI +NQFSVT
Sbjct: 248 HKINRLAFGDYFPGVVNPLDGVQWIQATPSGMYQYFIKVVPTVYTHVSGHTISTNQFSVT 307

Query: 183 EHFRSAEAGRLQALPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILDS 242
           EHFR+AE GRLQ+LPGVFFFYDLSPIKVTFTE+HVSFLHFLTNVCAIVGGVFTVSGILDS
Sbjct: 308 EHFRNAELGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDS 367

Query: 243 FIYHGQKAIKKKMEIGKFS 261
           FIYH QKAIKKK+EIGKFS
Sbjct: 368 FIYHSQKAIKKKIEIGKFS 386


>GSVIVT01003078001 assembled CDS
          Length = 386

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 203/259 (78%), Positives = 237/259 (91%)

Query: 3   IDKPLQRHGGRLEHNETYCGSCYGAEASDEDCCNNCEEVREAYRKKGWALSNPDLIDQCK 62
           I+KPLQRHGGRLEHNE YCGSCYGAE +D+DCCN+C+EVREAYRKKGW ++NPDLIDQCK
Sbjct: 128 IEKPLQRHGGRLEHNEKYCGSCYGAEVTDDDCCNSCDEVREAYRKKGWGMTNPDLIDQCK 187

Query: 63  REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNIS 122
           REGF+Q++K+EEGEGCN+YGFLEVNKVAGNFHF+PGK F QSN+HV+DLLA  KD +NIS
Sbjct: 188 REGFVQKVKEEEGEGCNVYGFLEVNKVAGNFHFSPGKGFYQSNIHVNDLLAISKDGYNIS 247

Query: 123 HKINRLTFGEYFPGVVNPLDGVHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSVT 182
           H+IN+L FG++FPGVVNPLDG  W Q+ P GMYQYF+KVVPT+YTD+ GHTIQSNQFSVT
Sbjct: 248 HRINKLAFGDHFPGVVNPLDGAQWFQDAPDGMYQYFIKVVPTIYTDIRGHTIQSNQFSVT 307

Query: 183 EHFRSAEAGRLQALPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILDS 242
           EHFRSAE GR  +LPGV+FFYDLSPIKVT  E+H SFLHF+TN+CAIVGG+FTVSGI+DS
Sbjct: 308 EHFRSAEPGRPHSLPGVYFFYDLSPIKVTSKEEHSSFLHFMTNICAIVGGIFTVSGIIDS 367

Query: 243 FIYHGQKAIKKKMEIGKFS 261
           F+YHG +AIKKKME+GKFS
Sbjct: 368 FVYHGHRAIKKKMELGKFS 386


>GSVIVT01000816001 assembled CDS
          Length = 351

 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 115/192 (59%), Gaps = 7/192 (3%)

Query: 64  EGFLQRIKDE--EGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNI 121
           E  ++++K     GEGC +YG L+V +VAGNFH     S    N+ V  ++       N+
Sbjct: 157 ENMVKKVKQALANGEGCRVYGVLDVQRVAGNFHI----SVHGLNIFVAQMIFDGAIHVNV 212

Query: 122 SHKINRLTFGEYFPGVVNPLDGVHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSV 181
           SH I+ L+FG  +PG+ NPLDG        SG ++Y++K+VPT Y  +S   + +NQFSV
Sbjct: 213 SHIIHDLSFGPKYPGLHNPLDGTVRILRGASGTFKYYIKIVPTEYRYISKEVLPTNQFSV 272

Query: 182 TEHFRSAEAGRLQALPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILD 241
            E+F        +  P V+F YDLSP+ VT  E+  SFLHF+T +CA++GG F ++G+LD
Sbjct: 273 MEYFSPMNEFD-RTWPAVYFLYDLSPVTVTIKEERRSFLHFITRLCAVLGGTFALTGMLD 331

Query: 242 SFIYHGQKAIKK 253
            ++Y   + + K
Sbjct: 332 RWMYRFLEMLTK 343


>GSVIVT01001983001 assembled CDS
          Length = 482

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 38/204 (18%)

Query: 77  GCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNISHKINRLTFGE---- 132
           GC I GF+ V KV GN   +      +S  H     +F     N+SH I+ L+FG     
Sbjct: 294 GCRIEGFVRVKKVPGNLVIS-----ARSGSH-----SFDPSQMNMSHVISHLSFGRKIAP 343

Query: 133 -----------YFPGVVNPLDG----VHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSN 177
                      Y  G  + L+G     H +    +   +++L+VV T       H +   
Sbjct: 344 RVMSDMKRVLPYIGGSHDRLNGRSYISHPSDSNANVTIEHYLQVVKTEVITTRDHKL--- 400

Query: 178 QFSVTEHFRSAEAGRLQAL--PGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFT 235
              V E+  +A +  +Q+L  P   F ++LSP++V  TE   SF HF+TNVCAI+GGVFT
Sbjct: 401 ---VEEYEYTAHSSLVQSLYIPVAKFHFELSPMQVLVTENRKSFWHFITNVCAIIGGVFT 457

Query: 236 VSGILDSFIYHGQKAIKKKMEIGK 259
           V+GILDS + H    + KK+E+GK
Sbjct: 458 VAGILDS-VLHNTMRLMKKIELGK 480


>GSVIVT01000700001 assembled CDS
          Length = 139

 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 3   IDKPLQRHGGRLEHNETYCGSCYGAEASDEDCCNNCEEVREAYRKKG 49
           I+K LQRHGGRLE N  YCGSCYGAE +D+DC N+C+E RE Y+K+G
Sbjct: 92  IEKLLQRHGGRLERNGKYCGSCYGAEVTDDDCGNSCDEDRETYKKRG 138