Jatropha Genome Database

JcCB0011561.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.50 - phase: 0 /partial/short
         (48 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036649001 assembled CDS                                        68   8e-13
GSVIVT01033632001 assembled CDS                                        66   4e-12
GSVIVT01011929001 assembled CDS                                        55   8e-09
GSVIVT01022200001 assembled CDS                                        50   3e-07
GSVIVT01008960001 assembled CDS                                        47   1e-06
GSVIVT01033531001 assembled CDS                                        45   1e-05

>GSVIVT01036649001 assembled CDS
          Length = 469

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           ADNLRQQTLQQMHRILTTRQSARALLAIHDYF
Sbjct: 422 ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 453


>GSVIVT01033632001 assembled CDS
          Length = 451

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/32 (96%), Positives = 32/32 (100%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           ADNLRQQTLQQMHRILTTRQSARALLAI+DYF
Sbjct: 404 ADNLRQQTLQQMHRILTTRQSARALLAINDYF 435


>GSVIVT01011929001 assembled CDS
          Length = 453

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 28/32 (87%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           AD LRQQTLQQMHRILTTRQ+ARALL I DY 
Sbjct: 406 ADLLRQQTLQQMHRILTTRQAARALLVISDYM 437


>GSVIVT01022200001 assembled CDS
          Length = 349

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           AD+LRQ+TLQQM RILT RQ+AR LLA+ +YF
Sbjct: 300 ADHLRQETLQQMVRILTVRQAARGLLALGEYF 331


>GSVIVT01008960001 assembled CDS
          Length = 361

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 28/32 (87%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           AD+LRQQTL+QM  +LTTRQ+AR LLA+ +YF
Sbjct: 312 ADHLRQQTLRQMSHLLTTRQAARGLLALGEYF 343


>GSVIVT01033531001 assembled CDS
          Length = 431

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 27/32 (84%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           ADNLR QT+ ++ ++LTTRQ+AR LLA+ +YF
Sbjct: 383 ADNLRHQTIHRLQQVLTTRQAARCLLAMAEYF 414