Jatropha Genome Database

JcCB0011561.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.40 + phase: 0 
         (132 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036643001 assembled CDS                                       152   3e-38

>GSVIVT01036643001 assembled CDS
          Length = 94

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 82/94 (87%)

Query: 39  MDIYNLQDVVTVSELRSSIASQIRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHII 98
           MDIYNL DVVTVS+LRS IAS+ RKNS+VTN KVIDMLLFKGMEE  N+VEH+KQRHHII
Sbjct: 1   MDIYNLDDVVTVSQLRSIIASEFRKNSHVTNTKVIDMLLFKGMEEFRNVVEHSKQRHHII 60

Query: 99  GQYVVGQHGLVQDLDSKDQGMSDFLKNFYKSNYY 132
           GQYV+ +  LVQD  +KDQGMS+FLKNFY SNY+
Sbjct: 61  GQYVLAREHLVQDAGAKDQGMSEFLKNFYSSNYF 94