Jatropha Genome Database
- JcCB0011561.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0011561.20 + phase: 0
(188 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01036664001 assembled CDS 249 4e-67
GSVIVT01010012001 assembled CDS 62 2e-10
GSVIVT01014360001 assembled CDS 58 3e-09
GSVIVT01034548001 assembled CDS 57 4e-09
GSVIVT01016282001 assembled CDS 55 2e-08
GSVIVT01020537001 assembled CDS 54 5e-08
GSVIVT01020089001 assembled CDS 54 6e-08
GSVIVT01032600001 assembled CDS 53 9e-08
GSVIVT01031727001 assembled CDS 52 1e-07
GSVIVT01009794001 assembled CDS 50 6e-07
GSVIVT01009792001 assembled CDS 50 6e-07
GSVIVT01025184001 assembled CDS 50 9e-07
GSVIVT01008848001 assembled CDS 49 1e-06
GSVIVT01025873001 assembled CDS 49 1e-06
GSVIVT01007337001 assembled CDS 48 2e-06
GSVIVT01031219001 assembled CDS 47 5e-06
>GSVIVT01036664001 assembled CDS
Length = 184
Score = 249 bits (637), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 122/150 (81%), Positives = 133/150 (88%), Gaps = 4/150 (2%)
Query: 39 TQKENSLFSTTNTTRKRPFSLSTQPRRLLCRPPLGKYVREDYLVKKKSAQEIQELVRGER 98
T + N LFSTTNT RPFSL PR+LLC PP GKYVREDYLVKK SA+E+QELV+ ER
Sbjct: 39 THQPNLLFSTTNT---RPFSLR-PPRKLLCTPPRGKYVREDYLVKKMSAKEVQELVKEER 94
Query: 99 NVPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLF 158
VP+IIDFYATWCGPCILMAQELEMLAVEYESNA+IVKVDTD+EYEFA DMQVRGLPTL+
Sbjct: 95 TVPLIIDFYATWCGPCILMAQELEMLAVEYESNALIVKVDTDDEYEFARDMQVRGLPTLY 154
Query: 159 FISPDPKKDAIRTEGLIPIQMMRDIIDKDM 188
FISPDP K+AIRTEGLIPIQMMRDIID +M
Sbjct: 155 FISPDPTKNAIRTEGLIPIQMMRDIIDNEM 184
>GSVIVT01010012001 assembled CDS
Length = 183
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 101 PIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFFI 160
P++++F+A WCGPC ++A ++ LA EY + KV+TD+ A +R +PT+ F
Sbjct: 96 PVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIVCCKVNTDDCPNIATQYGIRSIPTVLFF 155
Query: 161 SPDPKKDAIRTEGLIPIQMMRDIIDK 186
+K+++ G +P + I+K
Sbjct: 156 KNGERKESVI--GAVPKSTLTATIEK 179
>GSVIVT01014360001 assembled CDS
Length = 188
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 91 QELVRGERNVPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQ 150
Q LV + + P++++F+A WCGPC ++ + LA +Y KV+TDE A
Sbjct: 94 QSLVL-DADTPVLVEFWAPWCGPCRMIHPVINELAKQYTGKLKCYKVNTDESPSIATRYG 152
Query: 151 VRGLPTLFFISPDPKKDAIRTEGLIPIQMMRDIIDK 186
+R +PT+ KK+AI G +P + I+K
Sbjct: 153 IRSIPTVIIFKSGEKKEAII--GAVPKSTLTTSIEK 186
>GSVIVT01034548001 assembled CDS
Length = 175
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 82 VKKKSAQEIQELVRGERNVPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDE 141
KK++ + EL+ P+++DFYATWCGPC M L + + +VK+DT++
Sbjct: 68 AKKQTFSSLDELLANSEK-PVLVDFYATWCGPCQFMVPILNEVGASLKDKIQVVKIDTEK 126
Query: 142 EYEFAHDMQVRGLPTLFFISPDPK 165
A ++ LPT F I D K
Sbjct: 127 YPSIADKYRIEALPT-FIIFKDGK 149
>GSVIVT01016282001 assembled CDS
Length = 458
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 103 IIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFFISP 162
+++FYA WCG C +A E A E + A++ KVD EE +V+G PTL+F +
Sbjct: 1 MVEFYAPWCGHCKALAPEYAEAATELKGEAVLAKVDGTEESGLMDKYEVQGFPTLYFYAD 60
Query: 163 DPKK--DAIRTEGLI 175
K +RT+ I
Sbjct: 61 GVHKAYSGLRTKDAI 75
>GSVIVT01020537001 assembled CDS
Length = 163
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 101 PIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFFI 160
P++++F+A WCGPC ++ + L+ EY K++TD+ A +R +PT
Sbjct: 78 PVLVEFWAPWCGPCRIIHPVVAELSEEYAGKLKFFKLNTDDSPSIATQYGIRSVPTTMIF 137
Query: 161 SPDPKKDAIRTEGLIPIQMMRDIIDK 186
KKDA+ G +P + I+K
Sbjct: 138 INGEKKDAVL--GAVPKTTLTASIEK 161
>GSVIVT01020089001 assembled CDS
Length = 121
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 102 IIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFFIS 161
++IDF ATWCGPC M + A +Y ++ VK+D DE + A + V+G+PT I
Sbjct: 37 MVIDFSATWCGPCRFMEPVINEFAEKY-TDVEFVKIDVDELSDVAQEFGVQGMPTFLLIK 95
Query: 162 PDPKKDAI 169
+ D +
Sbjct: 96 RGTEVDKV 103
>GSVIVT01032600001 assembled CDS
Length = 136
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 97 ERNVPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPT 156
E N ++IDF ATWCGPC M ++ +A +Y ++ VK+D DE + A + V+ +PT
Sbjct: 44 ESNQLMVIDFAATWCGPCKFMEPAVKSMASKY-TDVDFVKIDVDELPDVAQEFTVQAMPT 102
Query: 157 LFFI 160
+
Sbjct: 103 FVLL 106
>GSVIVT01031727001 assembled CDS
Length = 245
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 42/70 (60%)
Query: 100 VPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFF 159
+P++++FYA+WCGPC ++ + ++ +A +Y ++TD + A + +++ +P +
Sbjct: 157 IPVLVEFYASWCGPCRMVHRVIDEIAEDYAGRLKCFVLNTDHDLHIAENYEIKAVPVVLL 216
Query: 160 ISPDPKKDAI 169
K++++
Sbjct: 217 FKNGEKRESV 226
>GSVIVT01009794001 assembled CDS
Length = 114
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 102 IIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFFI 160
+++DF A+WCGPC +++ L LA + N I +KVD DE A + +V +PT F+
Sbjct: 30 VVVDFTASWCGPCRVISPFLAELAKKM-PNVIFLKVDVDELETVAKEWEVEAMPTFLFL 87
>GSVIVT01009792001 assembled CDS
Length = 109
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 100 VPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFF 159
V +++DF A+WCGPC +++ L LA + N I +KVD DE A + +V +PT F
Sbjct: 23 VLVVVDFTASWCGPCRVISPFLAELA-KKMPNVIFLKVDVDELETVAKEWEVEAMPTFLF 81
Query: 160 I 160
+
Sbjct: 82 L 82
>GSVIVT01025184001 assembled CDS
Length = 462
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 103 IIDFYATWCGPCILMAQELEMLAVEYESNAIIV-KVDTDEEYEFAHDMQVRGLPTLFFI 160
+++FYA WCG C +A E A E + +++ KVD EE E AH+ ++G PT++F
Sbjct: 1 MVEFYAPWCGHCQALAPEYAAAATELKGEKVVLAKVDATEESELAHEYDIQGFPTVYFF 59
>GSVIVT01008848001 assembled CDS
Length = 499
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 82 VKKKSAQEIQELV-RGERNVPIIIDFYATWCGPCILMAQELEMLAVEYESNA--IIVKVD 138
VK A +QE+V +NV +++FYA WCG C +A L+ +A+ +E++A +I K+D
Sbjct: 381 VKVVVADTLQEIVFNSGKNV--LVEFYAPWCGHCKKLAPILDEVAISFENDADVVIAKLD 438
Query: 139 TDEEYEFAHDMQVRGLPTLFFIS 161
V+G PTL+F S
Sbjct: 439 ATANDIPNDTFDVKGYPTLYFKS 461
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 102 IIIDFYATWCGPCILMAQELEMLAVEYESN---AIIVKVDT--DEEYEFAHDMQVRGLPT 156
I+++FYA WCG C +A E E A S+ I+ KVD D E A + ++RG PT
Sbjct: 55 IVVEFYAPWCGHCKKIAPEYEKAASILSSHDPPIILAKVDANDDANKELASEFEIRGFPT 114
Query: 157 L 157
L
Sbjct: 115 L 115
>GSVIVT01025873001 assembled CDS
Length = 139
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 80 YLVKKKSAQEIQELVRGERNVPIII-DFYATWCGPCILMAQELEMLAVEYESNAIIVKVD 138
+L+ K E ++L ++ I+I +F ATWCGPC ++A L+ E + + + VD
Sbjct: 27 HLITTKENWE-EKLAEASKDGKIVIANFSATWCGPCKMIAPFYCELS-EAHPSLMFLTVD 84
Query: 139 TDEEYEFAHDMQVRGLPTLFFI 160
DE EF+ ++ PT FF+
Sbjct: 85 VDELSEFSSSWDIKATPTFFFL 106
>GSVIVT01007337001 assembled CDS
Length = 126
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 98 RNVPIIIDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTL 157
+ P+++ F A WC P + M Q E LA Y +A+ + VD DE A M+V+ +PT
Sbjct: 32 QGCPVVVHFTAAWCIPSVAMNQFFEELASNY-PDALFLTVDVDEVKAVAVKMEVKAMPTF 90
Query: 158 FFISPDPKKD 167
+ + D
Sbjct: 91 LLMKEGAQVD 100
>GSVIVT01031219001 assembled CDS
Length = 357
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 86 SAQEIQELVRGERNVPIIIDFYATWCGPCILMAQELEMLAVEY--ESNAIIVKVDTDEEY 143
++ E+V E+ ++++FYA WCG C +A E +A + E + +I +D D+
Sbjct: 146 TSDSFDEVVLNEKK-DVLVEFYAPWCGHCKSLAPIYEKVATAFKSEGDVVIANLDADKYK 204
Query: 144 EFAHDMQVRGLPTLFFI 160
+ A V G PTL F
Sbjct: 205 DLAEKYGVSGYPTLKFF 221