Jatropha Genome Database

JcCB0011311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011311.10 + phase: 0 /pseudo/partial
         (475 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031955001 assembled CDS                                       825   0.0  

>GSVIVT01031955001 assembled CDS
          Length = 887

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/454 (87%), Positives = 424/454 (93%)

Query: 22  PEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR 81
           P+AKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRV LENATVR
Sbjct: 434 PDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVILENATVR 493

Query: 82  AAAVSTLAQFGALVDTLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGEVVETDKDV 141
           A+AVSTLA+FGA+VD+LKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDG VVETDKDV
Sbjct: 494 ASAVSTLAKFGAMVDSLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDV 553

Query: 142 QAFLFGPLDIPLFNLETSLKNYEPSEEPFDIHSVPKEVKSQPLAEKKAPGKKPTGLGSPP 201
           + FLFG LDIPL NLETSLKNYEPSEEPFDI  VP+EVKSQPLAEKKAPGKKPTGLG+PP
Sbjct: 554 KDFLFGLLDIPLVNLETSLKNYEPSEEPFDIDCVPREVKSQPLAEKKAPGKKPTGLGAPP 613

Query: 202 AGPPSTVDAYEKLISSIPEFSNFGKLFKSSAPVELTEAETEYAVNAVKHIFDGHVVFQYN 261
           +GP STVDAYEKL+SSIPE+++FGK FKSSAPVELTEAETEYAVN VKHIFD HVVFQYN
Sbjct: 614 SGPTSTVDAYEKLLSSIPEYASFGKPFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYN 673

Query: 262 CTNTIPEQLLENVMVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGKF 321
           CTNTIPEQLLENV VIVD            KPLRSLPYDSPGQTFVAFEKP+GVPAVGKF
Sbjct: 674 CTNTIPEQLLENVTVIVDASDAEEFSEVSTKPLRSLPYDSPGQTFVAFEKPDGVPAVGKF 733

Query: 322 SNMLRFIVKEVDPTTGEADEDGVEDEYQLEELEVVAADYMMKVGVSNFRNAWESMGPDCE 381
           SNML+FIVKEVDPTTGE +EDGVEDEYQLE+LEVVAADY++KVGVSNFRNAWESMGP+ E
Sbjct: 734 SNMLKFIVKEVDPTTGETEEDGVEDEYQLEDLEVVAADYVLKVGVSNFRNAWESMGPEFE 793

Query: 382 RVDEYGLGPRESLSEAVSAVINLLGMQPCEGTEVVASNSRSHTCLLSGVFIGNVRVLVRL 441
           RVDEYGLGPRESL+EAVS VI+LLG+QPCEGTEVV SNSRSHTCLLSGVFIGN++VLVRL
Sbjct: 794 RVDEYGLGPRESLAEAVSTVISLLGLQPCEGTEVVPSNSRSHTCLLSGVFIGNMKVLVRL 853

Query: 442 QFGIDGARDVAMKLAVRSEDESVSDAIHEIVASG 475
            FGIDG ++VAMKLAVRSEDESVSDAIHEIVASG
Sbjct: 854 SFGIDGPKEVAMKLAVRSEDESVSDAIHEIVASG 887