Jatropha Genome Database

JcCB0011301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011301.20 + phase: 0 
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031344001 assembled CDS                                       164   5e-42
GSVIVT01032508001 assembled CDS                                        56   4e-09

>GSVIVT01031344001 assembled CDS
          Length = 416

 Score =  164 bits (416), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/84 (91%), Positives = 84/84 (100%)

Query: 1   MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLE 60
           MKEQKFES+FGRKIAIDASMSIYQFLIVVGR+G+EMLTNEAGEVTSHLQGMF+RTIRLLE
Sbjct: 18  MKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLE 77

Query: 61  SGMKPVYVFDGQPPDLKKQELAKR 84
           +G+KPVYVFDG+PPDLKKQELAKR
Sbjct: 78  AGLKPVYVFDGKPPDLKKQELAKR 101


>GSVIVT01032508001 assembled CDS
          Length = 1449

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 7  ESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLESGMKPV 66
          E+  G+++AIDAS+ + QF+  +     EM+ N       HL G F R  +LL    KPV
Sbjct: 20 ETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRN------GHLLGFFRRICKLLFLRTKPV 73

Query: 67 YVFDGQPPDLKKQELAKR 84
          +VFDG  P LK++ +  R
Sbjct: 74 FVFDGGTPALKRRTVVAR 91