Jatropha Genome Database

JcCB0011271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011271.10 - phase: 0 
         (506 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007928001 assembled CDS                                       320   8e-88
GSVIVT01011506001 assembled CDS                                       282   2e-76
GSVIVT01027004001 assembled CDS                                       113   2e-25
GSVIVT01019386001 assembled CDS                                       102   6e-22
GSVIVT01012197001 assembled CDS                                        77   2e-14

>GSVIVT01007928001 assembled CDS
          Length = 432

 Score =  320 bits (821), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 177/343 (51%), Positives = 217/343 (63%), Gaps = 22/343 (6%)

Query: 1   MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTPCLPGECGLTENAIEG 60
           MV KR F DEELY ISSKHPRQ+++N+ L+SF EFVP +     P + GE  L +   EG
Sbjct: 1   MVQKRSFDDEELYEISSKHPRQLEHNHHLISFLEFVPFDDPLQKPRVQGEGELLKCKTEG 60

Query: 61  HERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEYFSP 120
            E+L S     FP+S  KD ET + G                   E  I VS  PEYFS 
Sbjct: 61  DEKLLSGFCTDFPISA-KDTETFMRGCISTSSWATSSTSEDDARSEAPIDVSLFPEYFSS 119

Query: 121 QRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDT 180
             P R     +D Y  LL YPPRK++PIGS+HQ D+P W+                    
Sbjct: 120 DSPVRASNDSDDYYLSLLDYPPRKSVPIGSDHQVDVPAWSQ-----------------GL 162

Query: 181 NLLLERKDENRLMGTCVIPMPE---FGLAAKVGNVRIDCNCLEKGSIVCVKQHIVEAREN 237
            L +   DE RL+GTCV+PMP+   F   A VGN R DC+C ++GS  CV+QHI EARE 
Sbjct: 163 ELSVGNIDEKRLIGTCVMPMPKSEPFCNDAVVGNGRTDCSCHDRGSYRCVRQHIAEAREK 222

Query: 238 LKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSR 297
           L+  LG+ERF +LGF +MGE+VAEKW+E EEQLF EVVFSNP SLGKNFW+ LS VFPSR
Sbjct: 223 LRGTLGEERFVKLGFHDMGEEVAEKWNEEEEQLFHEVVFSNPVSLGKNFWDNLSLVFPSR 282

Query: 298 SKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQESDDY 340
           + ++I+SYYFNVFMLR+RAEQNR +  N+ DSDNDEW E+DDY
Sbjct: 283 TTREIVSYYFNVFMLRKRAEQNRYDPENI-DSDNDEWPETDDY 324



 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 443 NDDHWPCSVDGLSYGSGQD----NNCDIRVWDAGYLVCPKGNVDLLPTCSMIEEVFGKES 498
           ND+H     D  S G+G        CD +VWDAGY+ C K  VDLL TCSMIEEVFG  +
Sbjct: 326 NDEHEMTEEDEDSAGNGDHWYALEPCDAKVWDAGYVTCSKTKVDLLSTCSMIEEVFGAGT 385

Query: 499 WNCKARDG 506
              K  DG
Sbjct: 386 GTYKGADG 393


>GSVIVT01011506001 assembled CDS
          Length = 372

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/345 (46%), Positives = 206/345 (59%), Gaps = 18/345 (5%)

Query: 1   MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTPCLP---GECGLTENA 57
           MV KRPF DEE  N++ KH RQ+++ N LVS +  VP  +A     L    GE   +++ 
Sbjct: 1   MVHKRPFGDEETSNVACKHSRQLEHTNHLVSSAGVVPCNIAPQRTQLSDGEGEDSFSKSQ 60

Query: 58  IEGHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEY 117
            EG  R A D+V        KD ET   G S+                E A ++S  PEY
Sbjct: 61  DEG--RNAIDLVTDVSNGPAKDFETSALG-SISGFLWLNSSTIEEDKSEAAFHLSFFPEY 117

Query: 118 FSPQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMC 177
           F      R V  HED++S LL +PP+K + IG  HQA IPEW P                
Sbjct: 118 FEADHGVRAVIQHEDIFSSLLDHPPQKLVSIGPEHQALIPEWAP-------QLLENSLDY 170

Query: 178 PDTNLLLERKDENRLMGTCVIPMPEFGLAA----KVGNVRIDCNCLEKGSIVCVKQHIVE 233
            DT+  +    E  LMGT VIPMP++   A    K G +  +CNCL  GSI C +QH++E
Sbjct: 171 SDTSGFMNGGKEEELMGTIVIPMPDWEPLAYNFCKGGGIGNECNCLHVGSISCTRQHVME 230

Query: 234 ARENLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSV 293
           AR+ L+  LG++ FE+LGFC+MGE+VA+KWSE EE  F EVV S PASL KNFW+ LS +
Sbjct: 231 ARQRLRENLGQDMFEKLGFCDMGEEVADKWSEDEEHAFDEVVLSYPASLDKNFWDHLSGI 290

Query: 294 FPSRSKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQESD 338
           FPSR+KKD++SYYFNVFMLR+RAEQNR + +N+ DSDNDEWQ S+
Sbjct: 291 FPSRTKKDLVSYYFNVFMLRKRAEQNRFDPLNI-DSDNDEWQRSE 334


>GSVIVT01027004001 assembled CDS
          Length = 594

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 107/193 (55%), Gaps = 30/193 (15%)

Query: 147 PIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMPEFG-- 204
           P+G   QA IPEW                    T ++ E   +++ +GT V P+ +    
Sbjct: 391 PVGPAFQATIPEW--------------------TGVVSE--IDSKWLGTRVWPLDKIEHK 428

Query: 205 -LAAK--VGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMGEQVA 260
            L  +  +G  R D C C   GSI CV+ H+ E R  +K  LG   F+   F +MGE V 
Sbjct: 429 FLIERDPIGKGRQDSCGCQFPGSIACVQFHVAEKRIRIKLELGSA-FQHWQFDKMGEVVG 487

Query: 261 EKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFMLRRRAEQNR 320
             WSE E++ F+E+V  NP S+G  FW+ +   F ++S++D++SYYFNVF+L+RRA+QNR
Sbjct: 488 LSWSEEEKKRFKEIVRLNPPSMGVRFWDEIFKSFSTKSREDLVSYYFNVFLLQRRADQNR 547

Query: 321 CNSMNVDDSDNDE 333
               N+ DSD+DE
Sbjct: 548 LTPNNI-DSDDDE 559


>GSVIVT01019386001 assembled CDS
          Length = 532

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 30/196 (15%)

Query: 144 KAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMPEF 203
           K IP+G N QA++PEW                    T  + E   +++ +GT V P+   
Sbjct: 326 KPIPVGPNFQAEVPEW--------------------TGEVTE--SDSKWLGTQVWPLENG 363

Query: 204 GLAAK-----VGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMGE 257
             + +     VG  + D C+C   GS+ CV+ HI E R  LK  LG   F    F  MGE
Sbjct: 364 ECSFRIEKDCVGRGKPDSCDCRFSGSVECVRFHIAEKRMKLKLDLGS-LFYHWRFDRMGE 422

Query: 258 QVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFMLRRRAE 317
           +++  W+  EE+ F+ ++  N +    +FW+    +FP+++++ ++SYYFNVF++RRR  
Sbjct: 423 EISLAWTTEEEKRFKHMIRLNSSLQSPSFWDNALRIFPTKTREALVSYYFNVFLIRRRIY 482

Query: 318 QNRCNSMNVDDSDNDE 333
           QNR     + DSD+DE
Sbjct: 483 QNRVTPRKI-DSDDDE 497


>GSVIVT01012197001 assembled CDS
          Length = 554

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 30/169 (17%)

Query: 1   MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTPCLPGECGL------- 53
           M LKR F +EE   +  K+ + V+  ++L SF E VP + A   P +  EC         
Sbjct: 93  MGLKRSFENEEFQELPFKNMKCVESRDKLASFGEIVPCKDAPQKPDISDECSFYKFQCGT 152

Query: 54  --TENAIEGHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYV 111
              EN +   +    +I A  P+S     E    GRS+                  A Y 
Sbjct: 153 EGVENGVSVLDDKGFEISA--PLSCNGSSEE--DGRSVA-----------------AAYS 191

Query: 112 SCTPEYFSPQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWN 160
           S +PEYF    P RTVA  ED+YS LL   PR+ +P+G +HQA++P W+
Sbjct: 192 SLSPEYFESYLPRRTVAQFEDIYSSLLDCSPRRQVPVGPDHQANVPVWS 240