Jatropha Genome Database

JcCB0010841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.20 - phase: 0 /partial
         (181 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013666001 assembled CDS                                       144   2e-35

>GSVIVT01013666001 assembled CDS
          Length = 714

 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 112/190 (58%), Gaps = 14/190 (7%)

Query: 1   SFRARTERALVKRQIEDTGSRVAIKEILSFTLTEKGSFVKEILLQEVAKGLDALGLATLD 60
           S RARTERALV +Q+E T SR+ +K+ILSFTLTEKG+FV+E+LL+E AKGLDALGLATLD
Sbjct: 530 SLRARTERALVTKQMEGTDSRLVVKQILSFTLTEKGTFVREMLLEEFAKGLDALGLATLD 589

Query: 61  FLTXXXXXXXXXXXXXXXXXMTEEDIMNXXXXXXXXXXXSGSQKNGSSIEEVKGPYRNPN 120
            +T                 MT++DI N           SG QK  SS +      R  N
Sbjct: 590 SITSVTATTLPFSASRPFSSMTDDDINNLRTLRRLLLLLSGPQKTESSSK-----VRAFN 644

Query: 121 IFL--------EEVS-DFYQLESVQDILPVLSVIXXXXXXXXXXXXXXXADIAGRLISRA 171
             +        EEVS  FYQL SVQ+ILP+LS+I               +++AGRL+SR 
Sbjct: 645 CLIYKVLIKDSEEVSLAFYQLASVQEILPILSIIPELPPELQQQLLLLPSNLAGRLMSRV 704

Query: 172 TARTIRRMFL 181
            ARTIRR+FL
Sbjct: 705 AARTIRRIFL 714