Jatropha Genome Database

JcCB0010841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.10 + phase: 0 /partial
         (285 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013668001 assembled CDS                                       240   5e-64
GSVIVT01022229001 assembled CDS                                       180   5e-46
GSVIVT01033029001 assembled CDS                                        76   2e-14
GSVIVT01024319001 assembled CDS                                        71   7e-13

>GSVIVT01013668001 assembled CDS
          Length = 292

 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 152/230 (66%), Gaps = 9/230 (3%)

Query: 38  APVLQSEKLHASSDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTF 97
           AP ++S   +A  D NWLLK KGQEVA  LNG  +FLV            ILSEALGY+F
Sbjct: 63  APAVESGNFYACFDGNWLLKKKGQEVASNLNGRCIFLVGMMGSGKTTVGKILSEALGYSF 122

Query: 98  VDRQHILACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXX 157
           VD       SD +VE+A GG SV+ I+ Q GE FFRD+ESEAL KL              
Sbjct: 123 VD-------SDTFVEKAVGGTSVSQIFNQCGEKFFRDYESEALRKLASIPKQVVATGGGA 175

Query: 158 XXXXXNWKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSK 217
                NWKYM QG++VFLDVPLDTLA+RIA +GTDSRPLLHF+SGD+Y KAF+GL  LSK
Sbjct: 176 VVRPINWKYMKQGVSVFLDVPLDTLARRIADVGTDSRPLLHFESGDAYTKAFVGLFTLSK 235

Query: 218 NRFQAYSDADITVSISHLADNLGAQDVSDLEPATIALEVSPLLDFELHLH 267
            R +AY++AD TVS+ H+A  LG +D+SD+ PA IA+EV  L+  E +L 
Sbjct: 236 KRTEAYANADATVSLQHIAARLGLEDISDITPAAIAMEV--LVQIENYLQ 283


>GSVIVT01022229001 assembled CDS
          Length = 301

 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 134/234 (57%), Gaps = 9/234 (3%)

Query: 33  FNYFLAPVLQSEKLHASSDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEA 92
           +  F AP+L+S     S DE  +LK K QE+   ++G  ++LV            ILSE 
Sbjct: 66  YRNFPAPILESGSFPPSLDEALILKNKSQEILPYIDGRCVYLVGMMGSGKTTIGKILSEV 125

Query: 93  LGYTFVDRQHILACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXX 152
           LGY+F D       SD  VE A  G SVA I+  YGE FFR+ ESE L KL L       
Sbjct: 126 LGYSFCD-------SDTLVELAVKGTSVAEIFNLYGEGFFRNKESETLQKLSLTHHMVVS 178

Query: 153 XXXXXXXXXXNWKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGL 212
                     NWKYM++GI+V+LDVPL+ LA+RI+A+GT+SRPLLH DSGD+Y +    L
Sbjct: 179 TGGGAVIRPINWKYMAKGISVWLDVPLEALARRISAVGTNSRPLLHHDSGDAYNRTLTRL 238

Query: 213 LALSKNRFQAYSDADITVSISHLADNLGAQDVSDLEPATIALEVSPLLDFELHL 266
             L K R  AY++A+  VS+  +A  LG +DV++L P  IA+E   LL  E  L
Sbjct: 239 SNLWKERGDAYANANARVSLEEIAAKLGHRDVTNLTPTVIAIEA--LLQIEAFL 290


>GSVIVT01033029001 assembled CDS
          Length = 305

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           D +  +K K  E++  L G S+FLV            +L++AL Y   D       SD  
Sbjct: 82  DLSLAVKKKAMEISPVLKGTSIFLVGMNSTIKTNVGKLLADALRYYHFD-------SDSL 134

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           VE+A GG S A   ++  E  F D E+E L +L                   N   +  G
Sbjct: 135 VEEACGGESAAKSLKEQDEKGFHDSETEVLKQLSSMGRLVVCAGDGLVQSSTNLALLRHG 194

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSY-----KKAFMGLLALSKNRFQAYSD 225
           I++++DVP++ +AK +   G    P+    + +SY      + F  L  + +     Y+ 
Sbjct: 195 ISIWIDVPIEMVAKNMIEEGVQI-PVTELSTAESYSETGDNQVFAQLAVVYEEMKGGYAT 253

Query: 226 ADITVSISHLADNLGAQDVSDLEPATIALEV 256
           AD +VS+  +A  LG  D+  +    +A+EV
Sbjct: 254 ADASVSLQKVASQLGYDDLDAVTTEDMAMEV 284


>GSVIVT01024319001 assembled CDS
          Length = 299

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 88  ILSEALGYTFVDRQHILACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXX 147
           +L++ALGY   D       +D  VE+A GG S A   ++  E  FRD E+E L +L    
Sbjct: 87  LLADALGYYHFD-------NDSLVEEACGGESAAKSLKEQDEEEFRDSETEVLKQLSSRG 139

Query: 148 XXXXXXXXXXXXXXXNWKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKK 207
                          N   +  GI++++DVP++ +AK +   G    P+    + +SY +
Sbjct: 140 QLAVCAGNGSVHSSINLALLRHGISIWIDVPIEMVAKNVIEEGVQI-PVTELSTAESYSE 198

Query: 208 AFMGLLALSKNRFQAYSDADITVSISHLADNLGAQDVSDLEPATIALEV 256
               L+ + + R   Y+ AD +VS+  +A  L   D+  +    + +EV
Sbjct: 199 TGAQLVMVYEERKGGYATADASVSLQKVASQLSYDDLDAVTTEDMTMEV 247