Jatropha Genome Database

JcCB0010741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010741.10 + phase: 1 /partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001194001 assembled CDS                                       118   1e-27

>GSVIVT01001194001 assembled CDS
          Length = 735

 Score =  118 bits (296), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 71/120 (59%)

Query: 20  SSTLVCQDETRXXXXXXXXXXXXFRQKIGLDLSDDDETQHTTKFETASHPQGSXXXXXXX 79
           S  +  +D+T+            FRQ++GL LS DDE QH   FE  SHP G+       
Sbjct: 612 SLAVYSKDQTKHFHIWHGSHHHTFRQRVGLQLSADDEAQHKPSFEATSHPPGTVVAPMAG 671

Query: 80  XXXXXXXXXXXXXEEGQPVLVLEAMKMEHVVKAPLAGYVHGLQVTAGQQVSDSTLLFSIK 139
                        EEGQP+LVLEAMKMEHVVKAP  G+VHGLQVTAGQQVSD + LFS++
Sbjct: 672 LVVKVLVKDGTNVEEGQPILVLEAMKMEHVVKAPSGGHVHGLQVTAGQQVSDGSFLFSVQ 731