Jatropha Genome Database

JcCB0010451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010451.20 + phase: 0 
         (501 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035645001 assembled CDS                                       754   0.0  

>GSVIVT01035645001 assembled CDS
          Length = 502

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/465 (77%), Positives = 407/465 (87%), Gaps = 4/465 (0%)

Query: 37  KQRPSNSLFHSLNSGFRSSNSRIFVSNSVTNPETEFLSSVSPVYAPTPPNRELRTPHSGY 96
           + R S+ +F +LNS   S  +R   S++  + ETE L SVSP+Y PTP NRELRTPHSGY
Sbjct: 42  RLRRSSQIF-ALNSTSTSEGNR---SSAAESGETESLGSVSPIYVPTPSNRELRTPHSGY 97

Query: 97  HFDGTTRQFFEGWYFKVSIPERKQSFCFMYSLENPAFRKKLTPFEVAQHGPRSTGVGAQI 156
           HFDG+ RQFFEGWYFKVSIPE+KQSFCFMYS+ENPAF+KKL  FE  Q+GPR TGVGAQI
Sbjct: 98  HFDGSPRQFFEGWYFKVSIPEQKQSFCFMYSVENPAFQKKLGTFEELQYGPRFTGVGAQI 157

Query: 157 LGAYDKYICQHVEESQNFWGNRHELVLGNTFVAEKGMQPPTKEVPPQDFSRRVSEGFQVT 216
           LGA DKYICQ  EES NFWG RHEL+LG+TFV  K ++PP KEVPP++F+RRV EGFQVT
Sbjct: 158 LGADDKYICQFSEESTNFWGCRHELMLGHTFVGRKDLRPPNKEVPPEEFNRRVIEGFQVT 217

Query: 217 PLWHQGFIRDDGRSDYVQTVKTARWEYSTRPVYGWGDVGSKQKSTAGWLAAFPVFEPHWQ 276
           PLWHQGFIRDDGRS+YV TVKTARWEYSTRP+YGWG+VGSKQKSTAGWLAAFPVFEPHWQ
Sbjct: 218 PLWHQGFIRDDGRSNYVDTVKTARWEYSTRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQ 277

Query: 277 ICMAGGLSTGWIEWDGERFEFKDAPSYSEKNWGAGFPRKWFWVQCNVFEGAIGEVALTAA 336
           ICMAGGLSTGWIEWDGER+EF++APSYSEKNWG GFPRKWFWVQCN FEGA GEV+LTAA
Sbjct: 278 ICMAGGLSTGWIEWDGERYEFENAPSYSEKNWGGGFPRKWFWVQCNAFEGADGEVSLTAA 337

Query: 337 GGLRQLPGLTENFESAALIGVHYEGIFYEFVPWNGVLNWEISPWGYWFITAENKSHLVEL 396
           GGLR++PGLTE FE+AAL+GVHY+GIFYEFVPWNGV++WEI+ WGYW+I+AEN+SH+VEL
Sbjct: 338 GGLRKIPGLTEVFENAALVGVHYDGIFYEFVPWNGVVSWEINQWGYWYISAENESHMVEL 397

Query: 397 KATTKDPGTTLRAPTTESGFAPACKDTCFGDLKLQIWERRYDGTKGKMILDVTSDMAAVE 456
            ATTKDPGTTLRAPTTE+G APACKD C G LKLQIW+R ++G+KGKMILDVTS+MAAVE
Sbjct: 398 VATTKDPGTTLRAPTTEAGLAPACKDNCSGALKLQIWKRTFNGSKGKMILDVTSNMAAVE 457

Query: 457 VGGGPWFNTWKGKTTTPELLNRALNVPVDVEGIFNFLPLFKPPGL 501
           VGGGPWFNTWKGKT  PEL+  AL VPVD + IF   P FKPPGL
Sbjct: 458 VGGGPWFNTWKGKTAAPELVRLALQVPVDEDAIFGLAPFFKPPGL 502