Jatropha Genome Database

JcCB0009781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009781.20 + phase: 0 
         (368 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032048001 assembled CDS                                       631   0.0  

>GSVIVT01032048001 assembled CDS
          Length = 365

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/366 (83%), Positives = 333/366 (90%), Gaps = 3/366 (0%)

Query: 1   MDVPVIDLTRYLEIADKLSTEPAELSGQLEELGPWLGDLCKEVSRILRETGALVVKDPRC 60
           MD+PVIDL+ YLEIA K + +   LS  ++   P    LC EVSR LRETGAL+VKDPRC
Sbjct: 1   MDLPVIDLSPYLEIAGKSAGDSTGLSDHID---PEYRRLCLEVSRSLRETGALLVKDPRC 57

Query: 61  SAEDNDRFIDMMEKYFERPPEFKRMQERPQLHYQVGVTPEGVEVPRSLVDKEMQEKLESM 120
           SAEDNDRFIDMME+YFERP EFKR+QER  LHYQVGVTPEGVEVPRSLVD+EMQ KL ++
Sbjct: 58  SAEDNDRFIDMMERYFERPEEFKRLQERRHLHYQVGVTPEGVEVPRSLVDEEMQVKLRAI 117

Query: 121 PKEFQPSTPRGPDPKWRYMWRVGPRPLDTRFKELNSEPVIPEGFPEWKETMDSWGHKMIS 180
           PKEFQPSTP GPDPKWRYMWRVGPRP +TRF+ELNS PVIPEGFPEW++TMDSWG+KMIS
Sbjct: 118 PKEFQPSTPTGPDPKWRYMWRVGPRPSNTRFQELNSAPVIPEGFPEWQDTMDSWGYKMIS 177

Query: 181 AIEAVAEMAAIGFGLSKDAFTSLMKQGPHLLAPTGSDLRCYGQEGTVFAGYHYDLNFLTI 240
           AIEAVAEMAAIGFGL KDAFTSLMKQGPHLLAPTGSDL+ YGQ GTVFAGYHYDLNFLTI
Sbjct: 178 AIEAVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGSDLQRYGQVGTVFAGYHYDLNFLTI 237

Query: 241 HGRSRFPGLNIWLRNGQKVEVKVPLGCLLIQTGKQIEWLTAGDCIAGLHEVVVTKRTIDA 300
           HGRSRFPGLNIWLRNGQKVEVKVP+GCLLIQTGKQIEWLTAGDCIAG+HEVVVT+RTIDA
Sbjct: 238 HGRSRFPGLNIWLRNGQKVEVKVPIGCLLIQTGKQIEWLTAGDCIAGMHEVVVTERTIDA 297

Query: 301 IKLASEQQRSLWRVSSTLFAHIASDAVLRPLGHFAEFPLASKYPPICAGEFVEQELAVIN 360
           IKLA++Q RSLWRVSSTLFAHIASDAVL+PLGHFAE PLA++YP +CAGEFVEQELA+IN
Sbjct: 298 IKLATQQNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLAARYPSMCAGEFVEQELAIIN 357

Query: 361 LKGSKG 366
           LKG+K 
Sbjct: 358 LKGNKA 363