Jatropha Genome Database

JcCB0009671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009671.20 - phase: 0 
         (366 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023624001 assembled CDS                                       409   e-114

>GSVIVT01023624001 assembled CDS
          Length = 358

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/366 (61%), Positives = 260/366 (71%), Gaps = 59/366 (16%)

Query: 1   MAICFLSPSKPVTFSPSLQNKRP---PPLLRCNFALPTIATTEPEPVYTSVRSFAPATVA 57
           MAICF SPSKP   SPS  + RP       RCNF+     T +P+PV+TSV+SFAPATVA
Sbjct: 46  MAICFHSPSKPTCISPSSNHYRPNLHARSFRCNFS--KTLTADPQPVFTSVKSFAPATVA 103

Query: 58  NLGPGFDFLGCAVDGLGDFVAVRIDPSVHPGEISISDITGTHASKKLSKNPLWNCATIAA 117
           NLGPGFD           F+   +D                                   
Sbjct: 104 NLGPGFD-----------FLGAAVD----------------------------------- 117

Query: 118 IAAMKMLNIRSVGLSLTLEKGLPLGSGLGXXXXXXXXXXXXXNEIFGGKLQVKDLVRAGL 177
                   +RSVGLSL+LEKGLPLGSGLG             NEIFG KL V DLV AGL
Sbjct: 118 --------VRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEIFGRKLGVDDLVLAGL 169

Query: 178 ESEAKVSGYHADNIAPAIMGGFVLIRNYNPLELMSLNFPEEKEIFFVLVSPDFEAPTKKM 237
           +SEAKVSGYHADN+APA+MGGFVLIR+Y+PLEL+ L FP +KE+FFVLV+P+FEAPTKKM
Sbjct: 170 DSEAKVSGYHADNVAPALMGGFVLIRSYDPLELIPLTFPSDKELFFVLVNPEFEAPTKKM 229

Query: 238 RAALPAEVGIPHHVWNCSQAGALVASVLQGDLVGLGKALSNDKIVEPKRAPLIPGMEEVK 297
           RAALP+E+G+  HVWNCSQA ALVAS+LQGDL GLGKALS+D+IVEP+RAPLIPGME VK
Sbjct: 230 RAALPSEIGMSDHVWNCSQAAALVASILQGDLRGLGKALSSDRIVEPRRAPLIPGMEGVK 289

Query: 298 KAAISAGAFGCTISGAGPTAVAVIDDEERGKEIGEKMVEAFLKEGNLKAVAMVKRLDRVG 357
           KAA+ AGAFGCTISGAGPTAVA+ DDEE+G+EIGE+MVEAFL+EG LKAVAMVK+LDRVG
Sbjct: 290 KAALEAGAFGCTISGAGPTAVAITDDEEKGREIGERMVEAFLEEGKLKAVAMVKQLDRVG 349

Query: 358 ARLVGS 363
           ARL+ S
Sbjct: 350 ARLMSS 355