Jatropha Genome Database

JcCB0009541.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.40 + phase: 0 /partial
         (190 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013850001 assembled CDS                                       273   4e-74
GSVIVT01026137001 assembled CDS                                       166   4e-42
GSVIVT01024575001 assembled CDS                                        60   6e-10
GSVIVT01032675001 assembled CDS                                        47   6e-06

>GSVIVT01013850001 assembled CDS
          Length = 306

 Score =  273 bits (697), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 126/182 (69%), Positives = 152/182 (83%), Gaps = 3/182 (1%)

Query: 10  SLTCALFPHHGGLSRTTSAFKWR-KERHVRRQTGSAIVTAKFELKPPPYPLNALEPHMSK 68
           SL  AL P  G   +++ +  WR K R   R+  S+++ AKFELKPPPYPL+ALEPHMS+
Sbjct: 9   SLASALLPAQGW--KSSRSLLWRGKRRTCSRKGNSSLIIAKFELKPPPYPLSALEPHMSR 66

Query: 69  DTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYNKGDVLPAFNNAAQAWNHEF 128
           +TLEYHWGKHHR YVDNLN+QIVGTELD + LED++ +TYNKGD+LPAFNNAAQ WNH  
Sbjct: 67  ETLEYHWGKHHRGYVDNLNRQIVGTELDGMTLEDIITITYNKGDLLPAFNNAAQVWNHTS 126

Query: 129 FWGCMKPGGGGKPSGELLQLIERDFGSFKKFVEEFRSAAATQFGSGWAWLAYKANRLNVE 188
           FW  MKPGGGG+PSG+LL+LI+RDFGSF++FVEEF+ AA+TQFGSGWAWLAYKANRL+V 
Sbjct: 127 FWESMKPGGGGEPSGDLLELIKRDFGSFERFVEEFKLAASTQFGSGWAWLAYKANRLDVG 186

Query: 189 NA 190
           NA
Sbjct: 187 NA 188


>GSVIVT01026137001 assembled CDS
          Length = 321

 Score =  166 bits (421), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 108/166 (65%), Gaps = 4/166 (2%)

Query: 22  LSRTTSAFKWRKERHVRRQTGS---AIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKH 78
           LS+     K +  RH  +  GS   + V A + LK PPY L+ALEPHMS+ TLE HWG H
Sbjct: 77  LSQRWKCPKLQNLRHKGQFHGSQKASKVLAFYGLKAPPYKLDALEPHMSRRTLEMHWGDH 136

Query: 79  HRAYVDNLNKQIVGTE-LDSLPLEDVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGG 137
           HR YV+ LNKQ+   + L    L+++V VTYN G+ LP FNNAAQ WNH+FFW  M+PGG
Sbjct: 137 HRGYVEGLNKQLEKDDILYGHTLDELVKVTYNNGNPLPEFNNAAQVWNHDFFWESMQPGG 196

Query: 138 GGKPSGELLQLIERDFGSFKKFVEEFRSAAATQFGSGWAWLAYKAN 183
           G  P   LL+ IE+DFGSF  F E+F  AA T FGSGW WL  K N
Sbjct: 197 GDMPRLGLLEQIEKDFGSFTNFKEKFLEAALTLFGSGWVWLVLKRN 242


>GSVIVT01024575001 assembled CDS
          Length = 228

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 23/162 (14%)

Query: 39  RQTGSAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSL 98
           ++ G       F L   PY   ALEP +S + +E H  KHH  Y+ N  K +   +LD  
Sbjct: 17  QRLGQVQALKTFSLPDLPYDYRALEPLVSGEIMELHHLKHHLTYITNYYKAL--HQLDE- 73

Query: 99  PLEDVVIVTYNKGDVLPAFN-------NAAQAWNHEFFWGCMKP---GGGGKPSGELLQL 148
                     +KGD             N     NH  F   + P   GGG  P+G L   
Sbjct: 74  --------AISKGDSSSILRLQSSIKFNGGGHINHSIFRKNLAPVIEGGGEPPNGLLGVA 125

Query: 149 IERDFGSFKKFVEEFRSAAATQFGSGWAWLAY--KANRLNVE 188
               +GS +  +++  +  A   GSGW WLA   +  RL +E
Sbjct: 126 FHSSYGSLEALMQKINAEGAALQGSGWVWLALDKEMKRLQIE 167


>GSVIVT01032675001 assembled CDS
          Length = 154

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 117 FNNAAQAWNHEFFWGCMKP---GGGGKPSGELLQLIERDFGSFKKFVEEFRSAAATQFGS 173
           FN      NH  FW  + P   GGG  P G L   I+  FGS +  V +  S  A   GS
Sbjct: 18  FNGGGHV-NHSIFWKNLTPVHEGGGEPPKGSLGWAIDTHFGSMEALVAKINSEGAAVQGS 76

Query: 174 GWAWLAYKAN--RLNVENA 190
           GW WL    +  +L VE  
Sbjct: 77  GWVWLGLDKDLKKLVVETT 95