Jatropha Genome Database

JcCB0009541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.30 + phase: 0 
         (208 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013845001 assembled CDS                                       182   9e-47
GSVIVT01021392001 assembled CDS                                       101   2e-22

>GSVIVT01013845001 assembled CDS
          Length = 106

 Score =  182 bits (462), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 84/106 (79%), Positives = 98/106 (92%)

Query: 103 IDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCGVELINRIYKVAEASGHFPDLH 162
           + ++DAQKLL+KV+GWRL +E   LKLQCLWKLRDFKCGVELINRIYKVAEA+GHFP+LH
Sbjct: 1   MTEEDAQKLLRKVVGWRLSDEAGVLKLQCLWKLRDFKCGVELINRIYKVAEAAGHFPNLH 60

Query: 163 LVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLVPRKRVWA 208
           L   NQ+RAELWT+SIGGLSMNDFIVAAK+DEI+TSDLVP+KR+WA
Sbjct: 61  LEQPNQIRAELWTASIGGLSMNDFIVAAKIDEIRTSDLVPKKRIWA 106


>GSVIVT01021392001 assembled CDS
          Length = 176

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 88  LAQQQCTPVSPLQ-APIDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCGVELIN 146
           L+ ++C P +     P+ +  A +L+ KV GW L+ E + LKL   WK++ F  G+EL  
Sbjct: 56  LSIKKCVPCNSNDIRPMTEQAANELIPKVPGWNLVNETDTLKLNRSWKVKSFTKGLELFQ 115

Query: 147 RIYKVAEASGHFPDLHLVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLVPRK 204
            +  VAEA GH PDLHLV  N V+ E+WT ++GGL+ NDFI+AAK++ +    L+ RK
Sbjct: 116 AVADVAEAEGHHPDLHLVGWNNVKIEIWTHAVGGLTENDFILAAKINGLDLQRLLRRK 173