Jatropha Genome Database

JcCB0009541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.10 + phase: 0 
         (370 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013843001 assembled CDS                                       530   e-151
GSVIVT01018329001 assembled CDS                                       484   e-137
GSVIVT01013841001 assembled CDS                                       434   e-122
GSVIVT01015724001 assembled CDS                                       238   3e-63
GSVIVT01036702001 assembled CDS                                       111   6e-25
GSVIVT01025829001 assembled CDS                                        99   2e-21

>GSVIVT01013843001 assembled CDS
          Length = 362

 Score =  530 bits (1366), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/371 (69%), Positives = 287/371 (77%), Gaps = 10/371 (2%)

Query: 1   MYMLVDCSNCHTPLQLPPGAKSIRCAICHAITLIADXXXXXXXXXXXXXXXGYHNYQXXX 60
           M MLVDCSNC  PLQLPPGA++IRC++CHA+T IAD                Y + Q   
Sbjct: 1   MMMLVDCSNCRIPLQLPPGARAIRCSVCHAVTRIADPRAVPTP--------AYSSTQSHH 52

Query: 61  XXXXXXXXXXXXXXXXXXX-XXXXXXKRALICGVSYKNTRNELKGCLNDAKCMKYLLINR 119
                                     K+AL+CGVSY ++R ELKGC+NDAKCMKYLL+NR
Sbjct: 53  AVPPAPPVPSPYGQMPAGQPAGVHGRKKALVCGVSYTSSRYELKGCVNDAKCMKYLLVNR 112

Query: 120 FKFPESSILMLNEEETDPYRRPTKHNLRMALYWLVQGCKPGDSLVFHFSGHGSQQRNYSG 179
           FKFPE+S+LML EEE DPY++PTKHN+RMA++WLVQGC+PGDSLVFHFSGHGSQQRNY+G
Sbjct: 113 FKFPEASVLMLTEEEIDPYKKPTKHNMRMAMFWLVQGCQPGDSLVFHFSGHGSQQRNYTG 172

Query: 180 DEVDGYDETLCPTDFETQGMIIDDEINATIVRPLPRGAKLHAIIDACHSGTVLDLPFLCR 239
           DEVDGYDETLCP DFETQGMI+DDEINA IVRPLP G KLHAIIDACHSGTVLDLPFLCR
Sbjct: 173 DEVDGYDETLCPLDFETQGMIVDDEINAAIVRPLPHGVKLHAIIDACHSGTVLDLPFLCR 232

Query: 240 MDRSGRYVWEDHRPRSGIWKGTSGGEAISFSGCDDDQTSADTSALSKITSTGAMTYSFIQ 299
           M+RSG+Y+WEDHRP SGIWKGTSGGE ISFSGCDD+QTSADTSALSKITSTGAMTYSFIQ
Sbjct: 233 MNRSGQYIWEDHRPPSGIWKGTSGGEVISFSGCDDNQTSADTSALSKITSTGAMTYSFIQ 292

Query: 300 AIERGHGTTYGDMLNAMRSTIRNTDNGPDGGIVXXXXXXXXXXXXXXXXXRQEPQLTANE 359
           AIE G+ TTYG+MLN+MRSTIRNTDN   GG+V                 RQEPQLTANE
Sbjct: 293 AIEVGNATTYGNMLNSMRSTIRNTDN-LGGGVVTSLLTMLLTGQSLSGGLRQEPQLTANE 351

Query: 360 PFDVYSKPFSL 370
           PFDVYSKPF L
Sbjct: 352 PFDVYSKPFIL 362


>GSVIVT01018329001 assembled CDS
          Length = 411

 Score =  484 bits (1245), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/370 (64%), Positives = 273/370 (73%), Gaps = 13/370 (3%)

Query: 5   VDCSNCHTPLQLPPGAKSIRCAICHAITLIADXXXXXXXXXXXXXXXGYHNYQXXXXXXX 64
           ++C++C TPLQLP GA+SIRCAIC  +T IAD                            
Sbjct: 51  LNCAHCRTPLQLPAGARSIRCAICQGVTQIADPRAVPPPPRAD---------HAPPPQPQ 101

Query: 65  XXXXXXXXXXXXXXXXXXXXXKRALICGVSYKNTRNELKGCLNDAKCMKYLLINRFKFPE 124
                                K+ALICG+SY+ +R+ELKGC+NDAKCMKYLL+N+F+FPE
Sbjct: 102 LPALSPYNHAPPGPPPSAHGRKKALICGISYRYSRHELKGCINDAKCMKYLLMNKFQFPE 161

Query: 125 SSILMLNEEETDPYRRPTKHNLRMALYWLVQGCKPGDSLVFHFSGHGSQQRNYSGDEVDG 184
           SSILML EEETDPYR P K NLRMALYWLVQGC+PGDSL+FH+SGHGS+QRNY+GDEVDG
Sbjct: 162 SSILMLTEEETDPYRIPNKQNLRMALYWLVQGCQPGDSLLFHYSGHGSRQRNYNGDEVDG 221

Query: 185 YDETLCPTDFETQGMIIDDEINATIVRPLPRGAKLHAIIDACHSGTVLDLPFLCRMDRSG 244
           YDETLCP DFETQGMI+DDEINATIVRPLP G KLHAIIDACHSGT+LDLPFLCRM RSG
Sbjct: 222 YDETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHAIIDACHSGTILDLPFLCRMSRSG 281

Query: 245 RYVWEDHRPRSGIWKGTSGGEAISFSGCDDDQTSADTSALSKITSTGAMTYSFIQAIERG 304
           +Y+WEDHRP+SG+WKGT+GGE ISFSGCDDDQTSADTSALS+ITSTGAMT+ FIQAIERG
Sbjct: 282 QYIWEDHRPQSGVWKGTNGGEVISFSGCDDDQTSADTSALSQITSTGAMTFCFIQAIERG 341

Query: 305 HGTTYGDMLNAMRSTIRNT----DNGPDGGIVXXXXXXXXXXXXXXXXXRQEPQLTANEP 360
           H  TYG +LNAMRS IR+       G  GG V                 RQEPQLTA +P
Sbjct: 342 HAATYGSVLNAMRSAIRSAGNGVGGGGGGGAVTSLISMLLTGGSVSGGLRQEPQLTACQP 401

Query: 361 FDVYSKPFSL 370
           FDVY+KPFSL
Sbjct: 402 FDVYTKPFSL 411


>GSVIVT01013841001 assembled CDS
          Length = 291

 Score =  434 bits (1115), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/285 (73%), Positives = 231/285 (81%), Gaps = 6/285 (2%)

Query: 86  KRALICGVSYKNTRNELKGCLNDAKCMKYLLINRFKFPESSILMLNEEETDPYRRPTKHN 145
           KRAL+CGV Y+NT  ELKG +NDA CMK+LL NRF FPE+SILML EEE DP R+PT+ N
Sbjct: 13  KRALVCGVLYRNTGRELKGSVNDAMCMKFLLRNRFNFPEASILMLTEEENDPDRKPTREN 72

Query: 146 LRMALYWLVQGCKPGDSLVFHFSGHGSQQRNYSGDEVDGYDETLCPTDFETQGMIIDDEI 205
           +R ALYWLVQGC+PGDSLVFHFSGHGSQ RNY+GDE+DG+DETLCP D++TQGMI+DDEI
Sbjct: 73  MRRALYWLVQGCQPGDSLVFHFSGHGSQLRNYTGDELDGFDETLCPMDYQTQGMILDDEI 132

Query: 206 NATIVRPLPRGAKLHAIIDACHSGTVLDLPFLCRMDRSGRYVWEDHRPRSGIWKGTSGGE 265
           NATIVRPLP G KLHAI+DACHSGTVLDLPFLCRM+RSG YVWEDHRPRSG+WKGTSGGE
Sbjct: 133 NATIVRPLPPGVKLHAIVDACHSGTVLDLPFLCRMNRSGHYVWEDHRPRSGVWKGTSGGE 192

Query: 266 AISFSGCDDDQTSADTSALSKITSTGAMTYSFIQAIERGHGTTYGDMLNAMRSTIRNTDN 325
            ISFSGCDD Q S DT ALSKI  TGAMT+SFIQAIE GH TTYG MLN+MRSTI N D 
Sbjct: 193 VISFSGCDDHQISIDTRALSKIALTGAMTFSFIQAIEHGHATTYGTMLNSMRSTIYNNDL 252

Query: 326 GPDGGIVXXXXXXXXXXXXXXXXXRQEPQLTANEPFDVYSKPFSL 370
           G  G  V                 +QEPQLT+N P DVY KPFSL
Sbjct: 253 G--GNYV----TYFPTMHMINDRLKQEPQLTSNVPIDVYMKPFSL 291


>GSVIVT01015724001 assembled CDS
          Length = 358

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 193/371 (52%), Gaps = 38/371 (10%)

Query: 4   LVDCSNCHTPLQLPPGAKSIRCAICHAITLIADXXXXXXXXXXXXXXXGYHNYQXXXXXX 63
           ++ CS C + +++PP A++I C  C+   L++                            
Sbjct: 15  VIQCSKCSSNIEVPPTAQTIHCRQCNTYILVS----------------------RASRSI 52

Query: 64  XXXXXXXXXXXXXXXXXXXXXXKRALICGVSYKNTRNELKGCLNDAKCMKYLLINRFKFP 123
                                 KRAL+CGVSY+  +  L+G +ND   M+  L  RF FP
Sbjct: 53  SGNPLVMSKQVTNSGATQPRLNKRALLCGVSYRGLKYRLRGTINDVNRMQQFLTKRFNFP 112

Query: 124 ESSILMLNEEETDPYRRPTKHNLRMALYWLVQGCKPGDSLVFHFSGHGSQQRNYSGDEVD 183
           + SI +L E++      PT+ N+  AL WLV+ C+ GDSLVF+FSGHG +Q +++GDE D
Sbjct: 113 KQSIRILTEDQPKEEDTPTRKNIENALRWLVEDCQSGDSLVFYFSGHGLRQPDFNGDEND 172

Query: 184 GYDETLCPTDFETQGMIIDDEINATIVRPLPRGAKLHAIIDACHSGTVLDLPFLCRMDRS 243
           G+DETLCP DF  +GMI+D++IN+ IV+PLP G KLHAIIDACHSGT+LDL ++ ++ +S
Sbjct: 173 GFDETLCPVDFSKEGMILDNDINSIIVKPLPAGVKLHAIIDACHSGTILDLHYIYKI-KS 231

Query: 244 GRYVWEDHRPRSGIWKGTSGGEAISFSGCDDDQTSADTSALS--------KITSTGAMTY 295
            ++  ED  P     KGTSGG AI FS C D Q + DTS  S        +    GAMT 
Sbjct: 232 NKW-EEDVAPSGRPPKGTSGGLAICFSACADSQRAVDTSIFSEKGKHIFARKDMYGAMTT 290

Query: 296 SFIQAIERGHGTTYGDMLNAMRSTIRNTDNGPDGGIVXXXXXXXXXXXXXXXXXRQEPQL 355
            FI+A+E     TY  +L  M       +      I                   QEPQL
Sbjct: 291 LFIRAVESHSNITYVGILEFMNEECEAMN------IRGRCFNRPSLRRMFNRGLLQEPQL 344

Query: 356 TANEPFDVYSK 366
           ++++ FDV  K
Sbjct: 345 SSSKDFDVDEK 355


>GSVIVT01036702001 assembled CDS
          Length = 371

 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 92/149 (61%), Gaps = 6/149 (4%)

Query: 86  KRALICGVSYKNTRNELKGCLNDAKCMKYLLINRFKFPESSILMLNEEETDPYRRPTKHN 145
           K+A++ G +Y+ T+ ELKGC+ND   M   L+NRF F +  I +L + + D   +PT  N
Sbjct: 3   KKAVLIGCNYQGTKAELKGCINDVNRMYNSLVNRFGFSQDDITVLIDTDPDGV-QPTGKN 61

Query: 146 LRMALYWLVQGCKPGDSLVFHFSGHGSQQRNYSGDEVD-GYDETLCPTDFETQGMIIDDE 204
           +R AL  L++  +PGD L  H+SGHG++    +G++ D GYDE + PTD     +I DD+
Sbjct: 62  IRRALLNLIRSAQPGDILFVHYSGHGTRLPAETGEDDDTGYDECIVPTDMN---LITDDD 118

Query: 205 INATIVRPLPRGAKLHAIIDACHSGTVLD 233
              + V  +P G ++  + D+CHSG ++D
Sbjct: 119 FR-SFVDKVPEGCRITIVSDSCHSGGLID 146


>GSVIVT01025829001 assembled CDS
          Length = 326

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 5/148 (3%)

Query: 86  KRALICGVSYKNTRNELKGCLNDAKCMKYLLINRFKFPESSILMLNEEETDPYRRPTKHN 145
           + A++ G +Y NTRNEL GC+ND   M+  L+ RF F  S + +L +E       PT  N
Sbjct: 7   RMAVLVGCNYHNTRNELHGCINDVLTMRETLVTRFGFQLSHVELLTDEPGS-LVMPTGAN 65

Query: 146 LRMALYWLVQGCKPGDSLVFHFSGHGSQQRNYSGDEVDGYDETLCPTDFETQGMIIDDEI 205
           ++ AL  +V   +PGD L FH+SGHG++  +         DE + P DF    +I D + 
Sbjct: 66  IKKALDRMVDQAEPGDVLFFHYSGHGTKIPSVKPHHPFSQDEAIVPCDF---NLITDIDF 122

Query: 206 NATIVRPLPRGAKLHAIIDACHSGTVLD 233
              + R +P+GA    + D+CHSG ++D
Sbjct: 123 RQLVDR-IPKGANFTILSDSCHSGGLID 149