Jatropha Genome Database

JcCB0009521.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009521.30 + phase: 2 /partial
         (383 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033317001 assembled CDS                                       229   2e-60
GSVIVT01025266001 assembled CDS                                       222   2e-58
GSVIVT01032091001 assembled CDS                                       203   9e-53
GSVIVT01032092001 assembled CDS                                       197   5e-51
GSVIVT01023938001 assembled CDS                                       125   3e-29
GSVIVT01030279001 assembled CDS                                       125   3e-29

>GSVIVT01033317001 assembled CDS
          Length = 507

 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 142/217 (65%), Gaps = 8/217 (3%)

Query: 1   NIFRNDELGXXXXXXXXXXXXXXXXXXXXXXXXTAFIGHIGPVELAAVGVSIAIFNQVSK 60
           N+F+ DELG                        TAFIGHIG VELAAVGVSIA+FNQVS+
Sbjct: 26  NVFKKDELGLEIAQIAFPAALALTADPIASLIDTAFIGHIGAVELAAVGVSIAVFNQVSR 85

Query: 61  IAIFPLVSVTTSLVAKEDTTGILSTEVHETEKLEDGVAVNKEMEELLPKAESTHKPSSVS 120
           IAIFPLVS+TTS VA+EDT G         E LE G+A++ EMEEL+P  +S H   S +
Sbjct: 86  IAIFPLVSITTSFVAEEDTVG-----RRTNENLEKGLAIDNEMEELIPHIDSMHNSPSRT 140

Query: 121 SVCTKS---DYERKHIPSASSALVVGCVLGLLQAFFLIFGAKPILNYMGVHSDSPMLIPA 177
              TK+   ++ER+HIPSASSALV+G VLGL+QA FLIF AK ILN+MGV+S SPML PA
Sbjct: 141 VNNTKNMEFEHERRHIPSASSALVIGGVLGLIQALFLIFSAKSILNFMGVNSGSPMLAPA 200

Query: 178 QQYLTXXXXXXXXXXXXXXMQGVFRGIKDTKTPLFAT 214
            QYLT              MQGVFRG KDTKTPL+AT
Sbjct: 201 MQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT 237



 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 119/148 (80%)

Query: 217 MLLLRVIAATCCVTLAASLAARHGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILATAF 276
           +LL+RVIA T CVTLAASLAAR GSTSMAAFQVCLQIWLATSLLADGLAVAGQAILA+AF
Sbjct: 306 LLLVRVIAVTFCVTLAASLAARLGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILASAF 365

Query: 277 ANKDYDKAKATTSRVLQFXXXXXXXXXXXXXXXXPFASGLFTEDINVLRIISIGIPFVTA 336
           A KDYDKA AT SRVLQ                  +AS +FT+D+NVL+++++GIPFV  
Sbjct: 366 AKKDYDKATATASRVLQLGLVLGLVLSVFLLVVLQYASRVFTKDVNVLQLMNLGIPFVAV 425

Query: 337 TQPINVLAFVFDGVNYGASDFAYSAYSM 364
           TQPIN LAFVFDGVN+GASDFAYSA SM
Sbjct: 426 TQPINALAFVFDGVNFGASDFAYSACSM 453


>GSVIVT01025266001 assembled CDS
          Length = 513

 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/216 (55%), Positives = 144/216 (66%), Gaps = 5/216 (2%)

Query: 3   FRNDELGXXXXXXXXXXXXXXXXXXXXXXXXTAFIGHIGPVELAAVGVSIAIFNQVSKIA 62
           F+ DELG                        TAFIG +GPVELAAVGVSIA+FNQVS+IA
Sbjct: 29  FKMDELGLEIAQIAFPAALALTADPIASLVDTAFIGQLGPVELAAVGVSIAVFNQVSRIA 88

Query: 63  IFPLVSVTTSLVAKEDTTGILSTEVHETEKLEDGVAVNKEMEELLPKAESTHKPSSVSSV 122
           IFPLVSVTTS VA+EDT GIL +E   ++ +E G AVN E ++L+PK  S  +P  +   
Sbjct: 89  IFPLVSVTTSFVAEEDTIGILDSEPEVSKSVEMGSAVNGETKKLIPKG-SGERPYDLEMH 147

Query: 123 CTKSD---YE-RKHIPSASSALVVGCVLGLLQAFFLIFGAKPILNYMGVHSDSPMLIPAQ 178
            +  D   +E ++HIPSAS+ALVVG +LGL+QA FLI GAKPILN+MGVHSDSPML PAQ
Sbjct: 148 GSGHDTPKFESKRHIPSASAALVVGGILGLIQAIFLISGAKPILNFMGVHSDSPMLAPAQ 207

Query: 179 QYLTXXXXXXXXXXXXXXMQGVFRGIKDTKTPLFAT 214
           +YLT              MQGVFRG KDTKTPL+AT
Sbjct: 208 EYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT 243



 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 115/149 (77%)

Query: 216 FMLLLRVIAATCCVTLAASLAARHGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILATA 275
            +LL+RVIA T CVTLAASLAAR G TSMAAFQVCLQ+WLATSLLADGLAVAGQAILA+A
Sbjct: 311 LLLLMRVIAVTFCVTLAASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASA 370

Query: 276 FANKDYDKAKATTSRVLQFXXXXXXXXXXXXXXXXPFASGLFTEDINVLRIISIGIPFVT 335
           FA +DY KA A  SRVLQ                   A+ LFT+D++VL +ISIGIPFV 
Sbjct: 371 FAKQDYSKATAAASRVLQLGLVLGLVLSSILGTGMQSAAKLFTKDLSVLHLISIGIPFVA 430

Query: 336 ATQPINVLAFVFDGVNYGASDFAYSAYSM 364
            TQPIN LAFVFDGVN+GASDFAYSAYSM
Sbjct: 431 VTQPINSLAFVFDGVNFGASDFAYSAYSM 459


>GSVIVT01032091001 assembled CDS
          Length = 542

 Score =  203 bits (517), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 143/243 (58%), Gaps = 29/243 (11%)

Query: 1   NIFRNDELGXXXXXXXXXXXXXXXXXXXXXXXXTAFIGHIGPVELAAVGVSIAIFNQVSK 60
           ++F+ DELG                        TAFIGHIGPVELAAVGVSIAIFNQ S+
Sbjct: 31  HVFKMDELGSEILRIAFPAALALAADPVASLIDTAFIGHIGPVELAAVGVSIAIFNQASR 90

Query: 61  IAIFPLVSVTTSLVAKEDTTGILSTEV-------------HETEKLED----------GV 97
           I +FPLVS+TTS VA+EDT G    E               ET++LED          G 
Sbjct: 91  ITVFPLVSITTSFVAEEDTVGKKGNEAPKGENSEKASVQNSETKELEDEDVILENLEKGS 150

Query: 98  AVNKEMEELLPKAE---STHKPSSVSSVC---TKSDYERKHIPSASSALVVGCVLGLLQA 151
             N EM+EL+P+ +   +T+KP SVS+V     K   ER+HIPSAS+ALV+G  LGL Q 
Sbjct: 151 NPNSEMKELIPEDDLKTTTYKPPSVSTVSPNRVKLKKERRHIPSASTALVIGSFLGLFQT 210

Query: 152 FFLIFGAKPILNYMGVHSDSPMLIPAQQYLTXXXXXXXXXXXXXXMQGVFRGIKDTKTPL 211
            FLIF AKP+L++MGV S S ML PA++YLT              MQGVFRG KDTKTPL
Sbjct: 211 IFLIFAAKPLLSFMGVKSGSSMLTPARRYLTLRALGAPAVLLSLAMQGVFRGFKDTKTPL 270

Query: 212 FAT 214
           +AT
Sbjct: 271 YAT 273



 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 123/171 (71%), Gaps = 2/171 (1%)

Query: 204 IKDTKTPLFATRFMLLL-RVIAATCCVTLAASLAARHGSTSMAAFQVCLQIWLATSLLAD 262
           +KD +   F    +LLL RVIAAT CVTLAASLAAR GST MAAFQ+CLQ+W+ +SLLAD
Sbjct: 328 LKDLQFRRFLKNGVLLLGRVIAATFCVTLAASLAARLGSTPMAAFQICLQVWMTSSLLAD 387

Query: 263 GLAVAGQAILATAFANKDYDKAKATTSRVLQFXXXXXXXXXXXXXXXXPFASGLFTEDIN 322
           GLAVAGQAILA AFA  DY KA    +RVLQ                  F + +F++D+N
Sbjct: 388 GLAVAGQAILACAFAENDYAKATNAATRVLQMGFILGLGLALLVGLGLQFGAKVFSKDVN 447

Query: 323 VLRIISIGIPFVTATQPINVLAFVFDGVNYGASDFAYSAYSMSRNWNGTME 373
           VL +ISIG+PFV ATQPIN LAFVFDGVN+GASDFAYSAYSM+ N+ G  E
Sbjct: 448 VLHLISIGVPFVAATQPINSLAFVFDGVNFGASDFAYSAYSMA-NFGGHCE 497


>GSVIVT01032092001 assembled CDS
          Length = 536

 Score =  197 bits (502), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 112/149 (75%)

Query: 216 FMLLLRVIAATCCVTLAASLAARHGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILATA 275
           F+LL RVIA T CVTLAASLAAR GS  MAAFQ+CLQ+WL +SLLADGLAVAGQAILA A
Sbjct: 329 FLLLWRVIAVTFCVTLAASLAARLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILACA 388

Query: 276 FANKDYDKAKATTSRVLQFXXXXXXXXXXXXXXXXPFASGLFTEDINVLRIISIGIPFVT 335
           FA KDY KA A  +RVLQ                  F +G+FT D NVL++ISI IPF+ 
Sbjct: 389 FAEKDYGKATAAATRVLQMTFVLGLGLALLVGVGLKFGAGVFTRDPNVLQLISISIPFIA 448

Query: 336 ATQPINVLAFVFDGVNYGASDFAYSAYSM 364
           ATQPIN LAFVFDGVN+GASDFAY+AYSM
Sbjct: 449 ATQPINCLAFVFDGVNFGASDFAYTAYSM 477



 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 137/234 (58%), Gaps = 21/234 (8%)

Query: 2   IFRNDELGXXXXXXXXXXXXXXXXXXXXXXXXTAFIGHIGPVELAAVGVSIAIFNQVSKI 61
           +F+ DELG                        TAFIGH+GPV LAAVGVSIAIFNQ S+I
Sbjct: 28  VFKMDELGSEILCIAFPAALALAADPIASLIDTAFIGHLGPVALAAVGVSIAIFNQASRI 87

Query: 62  AIFPLVSVTTSLVAKEDTTGILSTEV---HETEKLEDGVAVNKEME------ELLPKAES 112
           A+FPLVS+TTSLVA+EDT   +S EV     +EK+ D     KE++      E+L +  +
Sbjct: 88  AVFPLVSITTSLVAEEDTIERISNEVPKGENSEKVSDKNCETKELKDADAMLEILEEGST 147

Query: 113 THK------PSSVSSVCT------KSDYERKHIPSASSALVVGCVLGLLQAFFLIFGAKP 160
                    P     V T      KS  E++HIPSAS+ALV+G +LGL+Q  FLIF AKP
Sbjct: 148 KDSEMKASMPEDAPCVSTGGRNKAKSKREKRHIPSASTALVIGGLLGLIQTLFLIFAAKP 207

Query: 161 ILNYMGVHSDSPMLIPAQQYLTXXXXXXXXXXXXXXMQGVFRGIKDTKTPLFAT 214
           +L++MGV S SPML PA +YLT              MQGVFRG KDTKTPL+AT
Sbjct: 208 LLSFMGVKSGSPMLPPALKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT 261


>GSVIVT01023938001 assembled CDS
          Length = 604

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 90/147 (61%)

Query: 218 LLLRVIAATCCVTLAASLAARHGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILATAFA 277
           LL R +A    +TLA S+AAR G  +MA  Q+CLQ+WLA SLL D LA + QA++A++ +
Sbjct: 389 LLGRTLAVLATMTLATSVAARQGPIAMAGHQICLQVWLAVSLLTDALAASAQAMIASSLS 448

Query: 278 NKDYDKAKATTSRVLQFXXXXXXXXXXXXXXXXPFASGLFTEDINVLRIISIGIPFVTAT 337
             DY   K  T  VL+                    + +FT+DI VL I+  G+ FV A+
Sbjct: 449 KGDYKAVKEITYFVLKTGLFTGIFLAVALSAFYGSLATIFTKDIEVLGIVRTGVLFVCAS 508

Query: 338 QPINVLAFVFDGVNYGASDFAYSAYSM 364
           QPIN LAF+FDG+++GASDF Y+A SM
Sbjct: 509 QPINSLAFIFDGLHFGASDFPYAARSM 535



 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 22/179 (12%)

Query: 34  TAFIGHIGPVELAAVGVSIAIFNQVSKIAIFPLVSVTTSLVAKEDTTGILSTEVHETEKL 93
           TA+IG +GPVELA+ GVSI+IFN +SK+   PL+S++TS VA++ +              
Sbjct: 161 TAYIGRLGPVELASAGVSISIFNIISKLFNIPLLSISTSFVAEDISKN------------ 208

Query: 94  EDGVAVNKEMEELLPKAESTHKPSSVSSVCTKSDYERKHIPSASSALVVGCVLGLLQAFF 153
               A+N    E   + EST+    V         ER  + S S+AL++   +G+ +AF 
Sbjct: 209 ----AINNSASEEFYQEESTNGTPFVGVT------ERMQLSSVSTALLLAVGIGIFEAFA 258

Query: 154 LIFGAKPILNYMGVHSDSPMLIPAQQYLTXXXXXXXXXXXXXXMQGVFRGIKDTKTPLF 212
           L FG+   LN MG+   S M  PA+++L+              +QG+ RG KDTKTP+ 
Sbjct: 259 LYFGSGWFLNLMGIPLASSMHAPARRFLSLRALGAPAVVVSLALQGILRGFKDTKTPVL 317


>GSVIVT01030279001 assembled CDS
          Length = 558

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 90/148 (60%)

Query: 217 MLLLRVIAATCCVTLAASLAARHGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILATAF 276
           +L+ R +A    +TLA S+AA+ G   MA  Q+CLQ+WLA SLL D LA++GQA+LA+ +
Sbjct: 348 LLIGRTLAVLATMTLATSMAAKEGPIPMAGHQICLQVWLAISLLTDALALSGQALLASGY 407

Query: 277 ANKDYDKAKATTSRVLQFXXXXXXXXXXXXXXXXPFASGLFTEDINVLRIISIGIPFVTA 336
           +  +Y++A+    +VL+                    + LFT D+ VL I   GI FV  
Sbjct: 408 SQGNYEEAQQVIYKVLEMGLATGIALAVILFLGFGAFASLFTTDLEVLGIAWSGILFVAG 467

Query: 337 TQPINVLAFVFDGVNYGASDFAYSAYSM 364
           +QP+N +AFV DG+ YG SDF Y+AYSM
Sbjct: 468 SQPMNAIAFVIDGLYYGVSDFGYAAYSM 495



 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 38/216 (17%)

Query: 3   FRNDELGXXXXXXXXXXXXXXXXXXXXXXXXTAFIGHIGPVELAAVGVSIAIFNQVSKIA 62
           F  DELG                        TAF+GH+G VELAAVGVS+++FN VSK+ 
Sbjct: 96  FGADELGLEILSIALPAALALAADPIASLVDTAFVGHLGSVELAAVGVSVSVFNLVSKLF 155

Query: 63  IFPLVSVTTSLVAKEDTTGILSTEVHETEKLEDGVAVNKEMEELLPKAESTHKPSSVSSV 122
             PL+++TTS VA+E                          + L+ K+E+        S+
Sbjct: 156 NVPLLNITTSFVAEE--------------------------QALVSKSEN-------ESI 182

Query: 123 CTKSDYERKH-----IPSASSALVVGCVLGLLQAFFLIFGAKPILNYMGVHSDSPMLIPA 177
               D+   H     +PS S++L +   +G+ +A  L  G+  ++N MG+  DSPM +PA
Sbjct: 183 QIGQDHVNGHKRKMLLPSVSTSLALAAGIGIAEAVALSVGSGFLMNIMGIPVDSPMRVPA 242

Query: 178 QQYLTXXXXXXXXXXXXXXMQGVFRGIKDTKTPLFA 213
           +Q+LT               QG FRG KDTKTPL+A
Sbjct: 243 EQFLTLRAFGAPPIVIALAAQGTFRGFKDTKTPLYA 278