Jatropha Genome Database

JcCB0009521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009521.10 - phase: 1 /pseudo/partial
         (167 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033319001 assembled CDS                                       122   1e-28

>GSVIVT01033319001 assembled CDS
          Length = 1112

 Score =  122 bits (305), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 75/109 (68%), Gaps = 23/109 (21%)

Query: 58  LHKFVKDAVERDHKLDDILIPIIQHVLLISKFPFCTLLIFDVKSSINFSLRSKDLKHGGQ 117
           LH+++K+A +++ +LD+IL+P+I+H                       SL+ K+ KHG Q
Sbjct: 61  LHRYIKEAADKEERLDEILVPMIEH-----------------------SLKCKESKHGNQ 97

Query: 118 ALILINWLFQDEFFFQAVVRSLADIIDRKDDRYIALGWCILIRGLVEYE 166
           A++L+NWLFQDE  FQA+ R LADII RK+DRYIALGWC L+RGLVEYE
Sbjct: 98  AMVLLNWLFQDELLFQALARGLADIILRKEDRYIALGWCTLVRGLVEYE 146