Jatropha Genome Database
- JcCB0009491.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0009491.30 + phase: 1 /TE
(254 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01000641001 assembled CDS 116 1e-26
GSVIVT01012382001 assembled CDS 115 3e-26
GSVIVT01028343001 assembled CDS 82 3e-16
GSVIVT01009548001 assembled CDS 78 5e-15
GSVIVT01013655001 assembled CDS 75 4e-14
GSVIVT01013341001 assembled CDS 74 6e-14
GSVIVT01031724001 assembled CDS 60 1e-09
GSVIVT01015960001 assembled CDS 52 3e-07
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 84 ISFNCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSAL 143
+ F K+I RYL T + GL+Y KG DL +D D+AG +R+ST G G+
Sbjct: 270 LHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGA 329
Query: 144 VLWFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLK-LEIVPIKCGNISAINL 202
V W SKKQ V LST EAE++ C +W+++ L + LK + I C N S I L
Sbjct: 330 VSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKL 389
Query: 203 SKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
SKNPV H R+KHI++K+ F+RD G I + + E Q
Sbjct: 390 SKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLVYCRSENQ 428
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 90 KRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSK 149
KRILRYL +T G+ + D+ SD D+AG+ IDR+ST G C F G LV W SK
Sbjct: 770 KRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRRSTTGYCMFVGGNLVSWKSK 829
Query: 150 KQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPIK--CGNISAINLSKNPV 207
KQ VA S+AEAEY + ++W++ L D G P+K C N +A++++ NPV
Sbjct: 830 KQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFS-PTSPMKLFCDNQAAMHIAANPV 888
Query: 208 QHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQF 242
H RTKHIE+ FIR VQ I +I Q
Sbjct: 889 FHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQL 923
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 128 DRKSTYGTCQFRGSALVLWFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLAD--YGL 185
DR+ST G C F G L+ W SKKQ VA S+AEAEY ++W++ L + +G
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFG- 1524
Query: 186 KLEIVPIKCGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQFYLI 245
K E + + C N +A++++ NPV H RTKHIE+ FIR+ + G + F+ Q I
Sbjct: 1525 KDEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADI 1584
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 88 CCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWF 147
K+++RYL T + L Y + D ++ +S+ DF G D KST G + W
Sbjct: 635 AAKKVMRYLQRTNDFMLVYRRVDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWK 694
Query: 148 SKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEI---VPIKCGNISAINLSK 204
S KQ+ +A ST A+++ + V+W+++ +++ + I + I C N + + SK
Sbjct: 695 SVKQSLIAFSTMYAKFVACYGASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSK 754
Query: 205 NPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIE 239
N + +KH+E+K+ ++D V+K DIVI+ I E
Sbjct: 755 NNKISTSSKHMEIKYLIVKDLVKKEDIVIKHIRTE 789
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 86 FNCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVL 145
+N KR+LRYLC T + G+ + L SD D+AG+ D ST + G +
Sbjct: 4270 WNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPIS 4329
Query: 146 WFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVP-IKCGNISAINL 202
W SKKQ VA S+ EAEY + S A + WI L + G+ L P I C N+ A +L
Sbjct: 4330 WSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVIYCDNVGATHL 4387
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 87 NCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLW 146
N +IL+YL T GL + K D F + +D D+AGS DR+ST G C F L+ W
Sbjct: 10 NVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGNLITW 69
Query: 147 FSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI 192
SKKQ VA S+AE ++ + + VLWI++ L + LK+ I P+
Sbjct: 70 RSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEE--LKITIHPL 113
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 60.1 bits (144), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 90 KRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSK 149
KR+LRYL + GL + + DL ++D D A DR+ST G C F L+ W +
Sbjct: 1030 KRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDRRSTNGYCIFFRGNLISWSAS 1089
Query: 150 KQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI 192
KQ V+ S+ E++Y + + WIQ L + + L P+
Sbjct: 1090 KQKVVSRSSIESKYRGLANATIELTWIQSLLKELFVPLFQPPV 1132
>GSVIVT01015960001 assembled CDS
Length = 1205
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 174 LWIQQKLADYGLKLEIVPIK--CGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDI 231
+WI++ L + + P+K C N + I+++ NPV H RTKH+E+ FI++ + G +
Sbjct: 1 MWIRRLLEELKMTGS-SPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLV 59
Query: 232 VIEFIPIEKQ 241
+ +IP E+Q
Sbjct: 60 CMTYIPTEEQ 69