Jatropha Genome Database

JcCB0009491.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009491.20 - phase: 1 /TE
         (219 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000641001 assembled CDS                                       105   2e-23
GSVIVT01028343001 assembled CDS                                        83   1e-16
GSVIVT01015960001 assembled CDS                                        72   2e-13
GSVIVT01012382001 assembled CDS                                        69   1e-12
GSVIVT01009548001 assembled CDS                                        56   2e-08
GSVIVT01019138001 assembled CDS                                        54   5e-08

>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 4/208 (1%)

Query: 2   VTGSLLYLSISWPDFIFALIILSRFVDAPSETHL*QQREF*GTYKAHLIMAYSIENPQQS 61
           + GSL+YL+ + PD + ++ ++SR+++ P+E H    ++     +         +  ++S
Sbjct: 239 IVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRS 298

Query: 62  N*WDFKIAIRLTLLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA*YFAASVTVNQ 117
           +   F  +         R+    VF L         KK      ST EA + AA+V   Q
Sbjct: 299 DLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQ 358

Query: 118 AIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEV 177
           AIWLRKIL  L   Q  AT I  DN + I +  NPV  G++KHI +KY+ +R+   +  +
Sbjct: 359 AIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVI 418

Query: 178 VIKHCSSEDQATDIFTKALQKPRFEFLR 205
            + +C SE+Q  DIFTK L+   F  LR
Sbjct: 419 DLVYCRSENQVADIFTKPLKLAVFLELR 446


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 69/112 (61%)

Query: 102  STVEA*YFAASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHI 161
            S+ EA Y A ++   + IWLR +L  L+F +++  +++ DN+A + + +NPVF  +TKHI
Sbjct: 1495 SSAEAEYRAMALATCELIWLRHLLQELRFGKDEQMKLICDNQAALHIASNPVFHERTKHI 1554

Query: 162  KIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGVHSI 213
            ++  H IRE      V     +S DQ  DIFTK+L+ PR +++ + LG + +
Sbjct: 1555 EVDCHFIREKIASGCVATSFVNSNDQLADIFTKSLRGPRIKYICNKLGAYDL 1606


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%)

Query: 119 IWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVV 178
           +W+R++L  LK       ++  DNKAVI++  NPV   +TKH+++  H I+E      V 
Sbjct: 1   MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVC 60

Query: 179 IKHCSSEDQATDIFTKALQKPRFEFL 204
           + +  +E+Q  D+FTK L K +F+FL
Sbjct: 61  MTYIPTEEQVADVFTKGLHKRQFDFL 86


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%)

Query: 102 STVEA*YFAASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHI 161
           S+ EA Y A +    + +WL+ +L  L F      ++  DN+A + +  NPVF  +TKHI
Sbjct: 837 SSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSPMKLFCDNQAAMHIAANPVFHERTKHI 896

Query: 162 KIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLG 209
           ++  H IR+  + K +   +  S DQ  D FTK L    F  L   LG
Sbjct: 897 EVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKVLSSTVFHRLMFKLG 944


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 102 STVEA*YFAASVTVNQAIWLRKILVGLKFLQE--KATEILYDNKAVIAMVNNPVFQGKTK 159
           ST+ A + A     +Q +WLRK++  L+ +    +   I  DN A +    N      +K
Sbjct: 704 STMYAKFVACYGASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTSSK 763

Query: 160 HIKIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFE-----FLRSLLGVH 211
           H++IKY  +++  K++++VIKH  +E    D  TK L+   F+       RS +G H
Sbjct: 764 HMEIKYLIVKDLVKKEDIVIKHIRTESMLADPLTKGLKPIMFKEHVVNMGRSRIGCH 820


>GSVIVT01019138001 assembled CDS
          Length = 149

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 132 QEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVVIKHC 182
           +++AT +L DNK+ IA+  N VF  +T+HI +KYH I+EA  + EV + +C
Sbjct: 12  EDEATYLLCDNKSAIAIAKNYVFHSRTRHIAVKYHFIKEAISDGEVQLMYC 62