Jatropha Genome Database

JcCB0008751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008751.20 - phase: 0 
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033199001 assembled CDS                                       292   1e-79
GSVIVT01024247001 assembled CDS                                       241   2e-64
GSVIVT01037448001 assembled CDS                                       105   2e-23
GSVIVT01031450001 assembled CDS                                        58   4e-09
GSVIVT01016858001 assembled CDS                                        52   2e-07

>GSVIVT01033199001 assembled CDS
          Length = 251

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/256 (58%), Positives = 172/256 (67%), Gaps = 5/256 (1%)

Query: 1   MADQQRIHPVTQDVEAPQPPTAPLMPRNASKSDKGDPAVEENRYPPFQRTLPVIHSKPPK 60
           MAD QRIHP  QD EAP  PTAPL+PR ASKSD+ DP     +YPPFQRT+PV+HSKPPK
Sbjct: 1   MADPQRIHPA-QDPEAPHTPTAPLVPRGASKSDRSDPT---EQYPPFQRTIPVMHSKPPK 56

Query: 61  KRRSCFCRCLCWTXXXXXXXXXXXXXXXXXXXXXFRPKLPKYSIDGLQITEFNLSTDSSL 120
           K+RSC C+C CWT                     F+PKLPKYSIDGL+IT+ +L +D SL
Sbjct: 57  KKRSCLCKCFCWTISLLLLLIVIIAIVVAILFLVFKPKLPKYSIDGLRITQLSLGSDDSL 116

Query: 121 SAAFDVRITAENPNKKIGIYYEGGSHIGVLYLGTKLCEGSLPKFYQGHRNITVLNVPLQG 180
           SA FDV ITA NPN KIGIYYEGGS I V Y GT+LCEGSLPKFYQGH+N TVL V L G
Sbjct: 117 SATFDVNITARNPNTKIGIYYEGGSSITVFYTGTQLCEGSLPKFYQGHQNTTVLTVELTG 176

Query: 181 QTQDAYGLFTSLQQQQQENGVIPLNLRVKQPXXXXXXXXXXXXXXXXXXXXXDVDSLSTA 240
           QTQ+A GL T+L Q+Q+E G IPL L+VKQP                      VD+L   
Sbjct: 177 QTQNATGLLTTL-QEQRETGSIPLTLKVKQPVRIKLGKLKLMKMKFRATCNLVVDNLDAN 235

Query: 241 NDIRIRNSSCKFRLRL 256
           N I I++SSCKFRL+L
Sbjct: 236 NTISIKSSSCKFRLKL 251


>GSVIVT01024247001 assembled CDS
          Length = 249

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/256 (51%), Positives = 158/256 (61%), Gaps = 7/256 (2%)

Query: 1   MADQQRIHPVTQDVEAPQPPTAPLMPRNASKSDKGDPAVEENRYPPFQRTLPVIHSKPPK 60
           MAD Q+IHPV   V+   PPT PL+PR + +S+KGDP  +    PP QRT+PVIHSKPPK
Sbjct: 1   MADHQKIHPV---VDPEAPPTEPLVPRGSFRSEKGDP-FQHPPDPPLQRTIPVIHSKPPK 56

Query: 61  KRRSCFCRCLCWTXXXXXXXXXXXXXXXXXXXXXFRPKLPKYSIDGLQITEFNLSTDSSL 120
             RSC C+C+CWT                     F+PKLPKYS+D L+IT+F L+ D +L
Sbjct: 57  --RSCCCKCMCWTISLLVLLLVIVGAIAGVLYLVFQPKLPKYSVDSLRITDFQLNYDMTL 114

Query: 121 SAAFDVRITAENPNKKIGIYYEGGSHIGVLYLGTKLCEGSLPKFYQGHRNITVLNVPLQG 180
            A FD++I A NPNKKIGIYYE G  + V Y  TKLC GSLPKFYQGH+N TVLNV L G
Sbjct: 115 YAKFDMKIKANNPNKKIGIYYEKGGKLSVWYTNTKLCHGSLPKFYQGHQNTTVLNVVLTG 174

Query: 181 QTQDAYGLFTSLQQQQQENGVIPLNLRVKQPXXXXXXXXXXXXXXXXXXXXXDVDSLSTA 240
           QTQ    L T+LQ+QQQ+   IPL+L+V  P                      VDSLS  
Sbjct: 175 QTQYGSTLMTALQEQQQKRR-IPLDLKVDVPVAIKLGKLKLKKVRFLVECLLVVDSLSAN 233

Query: 241 NDIRIRNSSCKFRLRL 256
           N I IR S C+FRL+L
Sbjct: 234 NLISIRASDCRFRLKL 249


>GSVIVT01037448001 assembled CDS
          Length = 267

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 116/271 (42%), Gaps = 20/271 (7%)

Query: 1   MADQQRIHPVTQ--DVEAPQPPTAP---------LMPRNASKSDKGDPAVEENRYPPFQR 49
           MAD  R+HP     D  +P+PP +P              A       P  +  R+PP + 
Sbjct: 1   MAD--RVHPKASSPDATSPRPPQSPSNSNPPTPENPVPPAGTYVIQIPKDQIFRHPPPEN 58

Query: 50  TLPVIHSKPPKKRRSCFCRCLCWTXXXXXXXXXXXXXXXXXXXXXFRPKLPKYSIDGLQI 109
                     K RRS  C CLCW                       RPK   YS++ + I
Sbjct: 59  ARRYQKYSGRKPRRSGCCCCLCWFLGLAALLIFLLAIAAGIFYLVIRPKALSYSVEDISI 118

Query: 110 TEFNLSTDSSLSAA---FDVRITAENPNKKIGIYYEGGSHIGVLYLGTKLCEGSLPKFYQ 166
           T FN+S+ ++ ++    FDV + A+NPNKKI IYYE  S + V Y    LC G LP FYQ
Sbjct: 119 TGFNVSSAAATASISPEFDVTVRADNPNKKISIYYEEDSSVKVYYSDVDLCNGVLPVFYQ 178

Query: 167 GHRNITVLNVPLQGQ-TQDAYGLFTSLQQQQQENGVIPLNLRVKQPXXXXXXXXXXXXXX 225
             +N+TV    L G       G+  +L  QQ+E G IPL L++K P              
Sbjct: 179 PPKNVTVFQTALNGSGVVLTSGMKETLVNQQRE-GNIPLKLKLKAPVKIRVGSVKTWTIT 237

Query: 226 XXXXXXXDVDSLSTANDIRIRNSSCKFRLRL 256
                   VD L+  +  +I +  C F +RL
Sbjct: 238 VKVSCDLTVDKLTAES--KIVSKDCDFSVRL 266


>GSVIVT01031450001 assembled CDS
          Length = 265

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 96  RPKLPKYSIDGLQITEFNLSTDSSLSAAFDVRITAENPNKKIGIYYEGGSHIGVLYLGTK 155
           +PK   Y I+   I  F LS ++ L+A F   + A NPN+K+ IYY+    + V Y    
Sbjct: 112 KPKGLAYDIEDGSIHGFGLS-NNHLNATFHFVLRAYNPNRKVSIYYDSME-VSVSYDDQT 169

Query: 156 LCEGSLPKFYQGHRNITVLNVPLQGQTQDAYGLFTSLQQQQQENGVIPLNLRVK 209
           +    +  F+Q HRN+T L V L  Q+    G  +      + +G + L +RVK
Sbjct: 170 MASNGVQPFFQRHRNVTRLEVQLVAQSLLLSGPVSKDLHLDRSSGKVELEVRVK 223


>GSVIVT01016858001 assembled CDS
          Length = 325

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 95  FRPKLPKYSIDGLQITEFNLSTDSSLSAAFDVRITAENPNKKIGIYYE-----GGSHIGV 149
           +RP  P +++  L+I++FN+ T + L++  D+ ITA NPNKK+   Y+       +    
Sbjct: 154 YRPHRPSFAVTSLRISQFNV-TATKLTSKLDLSITARNPNKKLVFIYDPTTVSAATSSSD 212

Query: 150 LYLGTKLCEGSLPKFYQGHRNITVLNVPLQGQTQ 183
           + +GT    G++P F  G +N T   V +   ++
Sbjct: 213 VSVGT----GTIPAFVHGTKNTTSFKVLISSTSE 242