Jatropha Genome Database

JcCB0008751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008751.10 - phase: 0 /pseudo/partial
         (189 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022128001 assembled CDS                                       221   2e-58
GSVIVT01001372001 assembled CDS                                       155   8e-39

>GSVIVT01022128001 assembled CDS
          Length = 658

 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 128/170 (75%), Gaps = 25/170 (14%)

Query: 19  RKSXILSATGGIEGLVFALATRRKDFEVLVFXK-------------------------EA 53
           +K  IL A GGI GLV ALA ++K F+V+VF K                         EA
Sbjct: 75  KKVRILVAGGGIGGLVLALAAKKKGFDVVVFEKDMSAIRGEGQYRGPIQIQSNALAALEA 134

Query: 54  IDLEVAEEVMEAGCVTGDRINGLVDGVSGTWYVKFDTFTPAAERGLPVTRVISRMTLQQI 113
           +D+EVAEEVM AGC+TGDRINGLVDGVSG WYVKFDTFTPAAERGLPVTRVISRMTLQQI
Sbjct: 135 VDMEVAEEVMRAGCITGDRINGLVDGVSGDWYVKFDTFTPAAERGLPVTRVISRMTLQQI 194

Query: 114 LALAVGEDVIRNESNVVSFQDDGDKVTVTLENGQHFEGDLLVGADGIWSK 163
           LA AVGED+I N SNVV F+DDG+KVTV LENGQ +EGDLL+GADGIWSK
Sbjct: 195 LARAVGEDIIMNGSNVVDFEDDGNKVTVILENGQRYEGDLLIGADGIWSK 244


>GSVIVT01001372001 assembled CDS
          Length = 475

 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 91/112 (81%)

Query: 52  EAIDLEVAEEVMEAGCVTGDRINGLVDGVSGTWYVKFDTFTPAAERGLPVTRVISRMTLQ 111
           EAID  VA+++MEAGCVTGDRINGL DG+SG W  KFD  TPA  RGLPVT+VI RM+LQ
Sbjct: 113 EAIDENVAKQIMEAGCVTGDRINGLADGLSGEWLSKFDLLTPAIRRGLPVTQVICRMSLQ 172

Query: 112 QILALAVGEDVIRNESNVVSFQDDGDKVTVTLENGQHFEGDLLVGADGIWSK 163
            IL  AVG +++ N+S VV F +D +KVTVTLE+G+ ++GD+L+GADGIWS+
Sbjct: 173 DILVNAVGLEILSNKSKVVDFMEDSNKVTVTLEDGRQYDGDVLIGADGIWSE 224