Jatropha Genome Database

JcCB0008691.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008691.20 + phase: 0 
         (248 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015042001 assembled CDS                                       161   3e-40
GSVIVT01016721001 assembled CDS                                       105   1e-23

>GSVIVT01015042001 assembled CDS
          Length = 217

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/208 (48%), Positives = 126/208 (60%), Gaps = 32/208 (15%)

Query: 48  MTCNGEGSGNGSTPETLHQTAAATTMNLFPMNDKQDDISSRKMAASRTNFRSMDLFPQQA 107
           MTC+ EG+G   TPE+L QTA  TTMNLFPM ++   +S   + A   N +SM+LFPQQA
Sbjct: 1   MTCSLEGNG---TPESLRQTATTTTMNLFPMTERSAGVSG--IPARNMNLKSMNLFPQQA 55

Query: 108 GFAP---KEETQKKVDS---RAATPEPQTAQMTIFYAGKVIVFNDFPADKAKEIMQLASK 161
           GF     K++  K V+S   ++   EPQTAQMTIFY G+VIVFNDFPADKAKE+M+LA  
Sbjct: 56  GFGSSVSKDDAPKIVNSSVKKSGNVEPQTAQMTIFYGGQVIVFNDFPADKAKEVMRLAGM 115

Query: 162 GSSQNFTRFPSAPVKSVSPVFAPNAA-ARPTIEXXXXXXXXXXXXXXXXXXXXLIQDHIQ 220
           GSS      PS  VK  +P+ A   A + P +                     LIQ+ IQ
Sbjct: 116 GSSP----VPSTTVK--NPIDAGGMAPSNPNV--------------VPNFANSLIQERIQ 155

Query: 221 PSPQTITSDLPIARRASLQRFLEKRKDR 248
              Q +  +LPIAR+ASL RFLEKRKDR
Sbjct: 156 RPAQPVACELPIARKASLHRFLEKRKDR 183


>GSVIVT01016721001 assembled CDS
          Length = 239

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 106/200 (53%), Gaps = 39/200 (19%)

Query: 70  ATTMNLFPMN-DKQDDISSRKMAASRTNFRSMDLFPQQAGF---APKEETQKKVDSR-AA 124
           ++TM+   +N DK  + S + +  S +N +S D +PQ AGF   A  +E     D R +A
Sbjct: 16  SSTMSFDLLNKDKSSEASGQNVGGS-SNLKSSDFYPQFAGFGSLASIDEAINMADFRKSA 74

Query: 125 TPEPQTAQMTIFYAGKVIVFNDFPADKAKEIMQLASKGSSQNFTRFPS------------ 172
           T E +T+QMTIFYAG+V+VFNDFPA+KA+E+M LA+KG+ QN + F S            
Sbjct: 75  TTESETSQMTIFYAGQVLVFNDFPAEKAREVMLLAAKGTPQNTSGFLSTSGPEKINTGSS 134

Query: 173 -APVKSV--SPVFAPNAAARPTIEXXXXXXXXXXXXXXXXXXXXLIQDHIQPSPQT-ITS 228
            AP  S+  SP   PN  A                                P+PQ  + S
Sbjct: 135 TAPSPSIPASPATTPNPQA-----------------LSSGTFSIPASPAATPNPQAPLGS 177

Query: 229 DLPIARRASLQRFLEKRKDR 248
           +LPIARR SL RFLEKRKDR
Sbjct: 178 ELPIARRNSLHRFLEKRKDR 197