Jatropha Genome Database

JcCB0008641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008641.10 + phase: 2 /pseudo/partial
         (246 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014198001 assembled CDS                                       295   1e-80

>GSVIVT01014198001 assembled CDS
          Length = 527

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 153/168 (91%), Gaps = 2/168 (1%)

Query: 42  PWEQWTLVSEVVLEAGKQRIDKWNLMGRLGNQARKLITQCAAWFRPDIIYVKRPVYQCRF 101
           PW+QWTLV EVVLEAGKQR+DKW+LMGRLGN+AR LITQCAAW RPDIIYVKRPVYQCRF
Sbjct: 225 PWQQWTLVCEVVLEAGKQRLDKWSLMGRLGNKARALITQCAAWMRPDIIYVKRPVYQCRF 284

Query: 102 EPQEDFFRGLVPFLDPKTERDFIFELRNEEDGGSVEMCTYYEGLCKIVKVSQKAYVDDVV 161
           EPQ+DFFR L P LDPKTE DF+FELR+E+  G VE+CTY+ GLCKIVKV+ KA+VDDVV
Sbjct: 285 EPQDDFFRALTPLLDPKTEGDFLFELRHED--GRVEVCTYFAGLCKIVKVNPKAFVDDVV 342

Query: 162 NAYEKLSEEKKSRCLEFLLRNHPVQLLHPYTKEWKAKLEEMELGCDAP 209
            AYEKLS+E KSRCLEFLL NHPV+LLHPYTKEWKAKLEEMELGCDAP
Sbjct: 343 KAYEKLSDEGKSRCLEFLLGNHPVELLHPYTKEWKAKLEEMELGCDAP 390